{"response":{"status":"ok","message_type":"name"},"id":48703,"name":"Rhabdaerophilum aquaticum","url":"https://api.seqco.de/v1/names/48703.json","uri":"https://seqco.de/i:48703","rank":"species","status_name":"Valid (SeqCode)","syllabication":"a.qua.ti'cum","priority_date":"2025-08-28T15:27:19.105Z","description":{"raw":"Type strain is Rhabdoaerophilum aquaticum MsE-M23 (GCA_965234495.1), isolated from 5 m depth from Lake Most, Czechia (date: 2019-07-30), via high-throughput dilution to extinction cultivation. MsE-M23 has a genome size of 34 Mbp with a genomic GC content of 58.6%, contains 3 rRNA genes and 46 tRNAs. The genome is complete, consisting of a circular chromosome and one circular plasmid. Genes for flagellar assembly and chemotaxis were annotated in the genome. Pathways for cyanate and urea degradation, thiosulfate oxidation (Sox pathway), glycolate oxidation and the biosynthesis of all amino acids were predicted. Further, pathways for thiamine, riboflavin, NAD, coenzyme A, THF, and heme biosynthesis were identified. The closest cultivated relative is Rhabdaerophilum calidifontis SYSU G02060 (GCF_008641065.1), with an average amino acid identity of 66.3% and average nucleotide identity of 70.3%. Current GTDB classification (R220): d__Bacteria; p__Pseudomonadota; c__Alphaproteobacteria; o__Rhizobiales; f__Beijerinckiaceae; g__Rhabdaerophilum; s__.","html":"\u003cdiv\u003eType strain is \u003cem\u003eRhabdoaerophilum aquaticum\u003c/em\u003e MsE-M23 (GCA_965234495.1), isolated from 5 m depth from Lake Most, Czechia (date: 2019-07-30), \u003cem\u003evia\u003c/em\u003e high-throughput dilution to extinction cultivation. MsE-M23 has a genome size of 34 Mbp with a genomic GC content of 58.6%, contains 3 rRNA genes and 46 tRNAs. The genome is complete, consisting of a circular chromosome and one circular plasmid. Genes for flagellar assembly and chemotaxis were annotated in the genome. Pathways for cyanate and urea degradation, thiosulfate oxidation (Sox pathway), glycolate oxidation and the biosynthesis of all amino acids were predicted. Further, pathways for thiamine, riboflavin, NAD, coenzyme A, THF, and heme biosynthesis were identified. The closest cultivated relative is \u003cem\u003eRhabdaerophilum calidifontis \u003c/em\u003eSYSU G02060\u003cem\u003e \u003c/em\u003e(GCF_008641065.1), with an average amino acid identity of 66.3% and average nucleotide identity of 70.3%. Current GTDB classification (R220): d__Bacteria; p__Pseudomonadota; c__Alphaproteobacteria; o__Rhizobiales; f__Beijerinckiaceae; g__Rhabdaerophilum; s__.\u003c/div\u003e"},"formal_styling":{"raw":"Rhabdaerophilum aquaticum Salcher et al., 2025","html":"\u003cspan data-type=name data-value=\"Rhabdaerophilum aquaticum\" data-id=\"48703\" data-validated=1 data-correct=1 data-candidatus=0\u003e\u003ci\u003eRhabdaerophilum aquaticum\u003c/i\u003e\u003c/span\u003e Salcher et al., 2025"},"etymology":"L. neut. adj. aquaticum, living or found in the water","nomenclatural_type":{"class":"Genome","id":3595,"url":"https://api.seqco.de/v1/genomes/3595.json","uri":"https://seqco.de/g:3595","display":"NCBI Assembly: GCA_965234495.1"},"proposed_in":{"id":4170,"citation":"Salcher et al., 2025, Nature Communications","doi":"10.1038/s41467-025-63266-9","url":"https://api.seqco.de/v1/publications/4170.json"},"classification":[{"id":753,"name":"Bacteria","rank":"domain","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":3437,"url":"https://api.seqco.de/v1/names/3437.json","uri":"https://seqco.de/i:3437","display":"Bacillus"},"created_at":"2021-09-30T17:32:32.936Z","updated_at":"2024-12-13T10:36:54.606Z","url":"https://api.seqco.de/v1/names/753.json","uri":"https://seqco.de/i:753"},{"id":791,"name":"Pseudomonadota","rank":"phylum","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":16834,"url":"https://api.seqco.de/v1/names/16834.json","uri":"https://seqco.de/i:16834","display":"Pseudomonas"},"created_at":"2021-10-22T14:21:06.631Z","updated_at":"2026-07-10T13:23:46.732Z","url":"https://api.seqco.de/v1/names/791.json","uri":"https://seqco.de/i:791"},{"id":847,"name":"Alphaproteobacteria","rank":"class","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":4750,"url":"https://api.seqco.de/v1/names/4750.json","uri":"https://seqco.de/i:4750","display":"Caulobacter"},"created_at":"2021-10-22T14:21:07.612Z","updated_at":"2024-12-30T01:54:14.378Z","url":"https://api.seqco.de/v1/names/847.json","uri":"https://seqco.de/i:847"},{"id":1528,"name":"Hyphomicrobiales","rank":"order","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":9667,"url":"https://api.seqco.de/v1/names/9667.json","uri":"https://seqco.de/i:9667","display":"Hyphomicrobium"},"created_at":"2021-10-22T14:21:43.611Z","updated_at":"2024-12-30T01:39:41.930Z","url":"https://api.seqco.de/v1/names/1528.json","uri":"https://seqco.de/i:1528"},{"id":17564,"name":"Rhabdaerophilaceae","rank":"family","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"unknown","id":null,"url":null,"uri":null,"display":null},"created_at":"2021-10-22T14:40:09.329Z","updated_at":"2024-01-24T11:15:11.495Z","url":"https://api.seqco.de/v1/names/17564.json","uri":"https://seqco.de/i:17564"},{"id":17565,"name":"Rhabdaerophilum","rank":"genus","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":17566,"url":"https://api.seqco.de/v1/names/17566.json","uri":"https://seqco.de/i:17566","display":"Rhabdaerophilum calidifontis"},"created_at":"2021-10-22T14:40:09.345Z","updated_at":"2024-01-24T11:15:11.516Z","url":"https://api.seqco.de/v1/names/17565.json","uri":"https://seqco.de/i:17565"}],"children":[],"register":{"acc_url":"seqco.de/r:opjv7zsc","title":"Register list for 40 new names including Acidimicrobilacustridaceae fam. nov.","priority_date":"2025-08-28T15:27:19.105Z","url":"https://api.seqco.de/v1/registers/r:opjv7zsc.json","uri":"https://seqco.de/r:opjv7zsc"},"created_at":"2024-07-25T16:57:47.092Z","updated_at":"2025-09-02T09:12:36.072Z"}