{"response":{"status":"ok","message_type":"name"},"id":48721,"name":"Caulobacter lacus","url":"https://api.seqco.de/v1/names/48721.json","uri":"https://seqco.de/i:48721","rank":"species","status_name":"Valid (SeqCode)","syllabication":"la'cus","priority_date":"2025-08-28T15:27:19.105Z","description":{"raw":"Type strain is Caulobacter lacus MiH-16 (GCA_965234345.1), isolated from 15 m depth from Lake Milada, Czechia (date: 2019-07-23), via high-throughput dilution to extinction cultivation. MiH-16 has a genome size of 3.6 Mbp with a genomic GC content of 67.6%, contains 3 rRNA genes and 47 tRNAs. The genome is a high-quality draft consisting of 5 contigs. The genome contains genes encoding rhodopsins. Genes for flagellar assembly and chemotaxis were annotated in the genome. Pathways for taurine degradation, assimilatory sulfate reduction and methane/alkanesulfonate oxidation and the biosynthesis of all amino acids were predicted. Further, pathways for thiamine, riboflavin, NAD, coenzyme A, pimeloyl-ACP, THF, and heme biosynthesis were identified. The closest cultivated relative is Caulobacter sp. Root1455 (GCF_001426905.1), with an average amino acid identity of 64% and average nucleotide identity of 74.7%. Current GTDB classification (R220): d__Bacteria; p__Pseudomonadota; c__Alphaproteobacteria; o__Caulobacterales; f__Caulobacteraceae; g__Caulobacter; s__Caulobacter sp903858185.","html":"\u003cdiv\u003eType strain is \u003cem\u003eCaulobacter lacus\u003c/em\u003e MiH-16 (GCA_965234345.1), isolated from 15 m depth from Lake Milada, Czechia (date: 2019-07-23), \u003cem\u003evia\u003c/em\u003e high-throughput dilution to extinction cultivation. MiH-16 has a genome size of 3.6 Mbp with a genomic GC content of 67.6%, contains 3 rRNA genes and 47 tRNAs. The genome is a high-quality draft consisting of 5 contigs. The genome contains genes encoding rhodopsins. Genes for flagellar assembly and chemotaxis were annotated in the genome. Pathways for taurine degradation, assimilatory sulfate reduction and methane/alkanesulfonate oxidation and the biosynthesis of all amino acids were predicted. Further, pathways for thiamine, riboflavin, NAD, coenzyme A, pimeloyl-ACP, THF, and heme biosynthesis were identified. The closest cultivated relative is \u003cem\u003eCaulobacter \u003c/em\u003esp. Root1455\u003cem\u003e \u003c/em\u003e(GCF_001426905.1), with an average amino acid identity of 64% and average nucleotide identity of 74.7%. Current GTDB classification (R220): d__Bacteria; p__Pseudomonadota; c__Alphaproteobacteria; o__Caulobacterales; f__Caulobacteraceae; g__Caulobacter; s__Caulobacter sp903858185.\u003c/div\u003e"},"formal_styling":{"raw":"Caulobacter lacus Salcher et al., 2025","html":"\u003cspan data-type=name data-value=\"Caulobacter lacus\" data-id=\"48721\" data-validated=1 data-correct=1 data-candidatus=0\u003e\u003ci\u003eCaulobacter lacus\u003c/i\u003e\u003c/span\u003e Salcher et al., 2025"},"etymology":"L. gen. n. lacus, of a lake, referring to the habitat from which the type strain was isolated.","nomenclatural_type":{"class":"Genome","id":3590,"url":"https://api.seqco.de/v1/genomes/3590.json","uri":"https://seqco.de/g:3590","display":"NCBI Assembly: GCA_965234345.1"},"proposed_in":{"id":4170,"citation":"Salcher et al., 2025, Nature Communications","doi":"10.1038/s41467-025-63266-9","url":"https://api.seqco.de/v1/publications/4170.json"},"classification":[{"id":753,"name":"Bacteria","rank":"domain","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":3437,"url":"https://api.seqco.de/v1/names/3437.json","uri":"https://seqco.de/i:3437","display":"Bacillus"},"created_at":"2021-09-30T17:32:32.936Z","updated_at":"2024-12-13T10:36:54.606Z","url":"https://api.seqco.de/v1/names/753.json","uri":"https://seqco.de/i:753"},{"id":791,"name":"Pseudomonadota","rank":"phylum","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":16834,"url":"https://api.seqco.de/v1/names/16834.json","uri":"https://seqco.de/i:16834","display":"Pseudomonas"},"created_at":"2021-10-22T14:21:06.631Z","updated_at":"2026-07-10T13:23:46.732Z","url":"https://api.seqco.de/v1/names/791.json","uri":"https://seqco.de/i:791"},{"id":847,"name":"Alphaproteobacteria","rank":"class","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":4750,"url":"https://api.seqco.de/v1/names/4750.json","uri":"https://seqco.de/i:4750","display":"Caulobacter"},"created_at":"2021-10-22T14:21:07.612Z","updated_at":"2024-12-30T01:54:14.378Z","url":"https://api.seqco.de/v1/names/847.json","uri":"https://seqco.de/i:847"},{"id":1956,"name":"Caulobacterales","rank":"order","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":4750,"url":"https://api.seqco.de/v1/names/4750.json","uri":"https://seqco.de/i:4750","display":"Caulobacter"},"created_at":"2021-10-22T14:22:07.655Z","updated_at":"2024-12-30T01:55:00.972Z","url":"https://api.seqco.de/v1/names/1956.json","uri":"https://seqco.de/i:1956"},{"id":2917,"name":"Caulobacteraceae","rank":"family","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":4750,"url":"https://api.seqco.de/v1/names/4750.json","uri":"https://seqco.de/i:4750","display":"Caulobacter"},"created_at":"2021-10-22T14:22:50.949Z","updated_at":"2024-12-30T01:54:52.395Z","url":"https://api.seqco.de/v1/names/2917.json","uri":"https://seqco.de/i:2917"},{"id":4750,"name":"Caulobacter","rank":"genus","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":4762,"url":"https://api.seqco.de/v1/names/4762.json","uri":"https://seqco.de/i:4762","display":"Caulobacter vibrioides"},"created_at":"2021-10-22T14:24:05.563Z","updated_at":"2026-02-04T10:37:23.050Z","url":"https://api.seqco.de/v1/names/4750.json","uri":"https://seqco.de/i:4750"}],"children":[],"register":{"acc_url":"seqco.de/r:opjv7zsc","title":"Register list for 40 new names including Acidimicrobilacustridaceae fam. nov.","priority_date":"2025-08-28T15:27:19.105Z","url":"https://api.seqco.de/v1/registers/r:opjv7zsc.json","uri":"https://seqco.de/r:opjv7zsc"},"created_at":"2024-07-26T10:58:56.644Z","updated_at":"2025-09-02T09:12:35.936Z"}