{"response":{"status":"ok","message_type":"name"},"id":495,"name":"Candidatus Rickettsia xinyangensis","url":"https://api.seqco.de/v1/names/495.json","uri":"https://seqco.de/i:495","rank":"species","status_name":"Automated discovery","syllabication":null,"priority_date":null,"description":{"raw":" A phylogenetic tree that we constructed using the 2,546-bp nucleotide sequence of these 5 genes concatenated showed that Rickettsia sp. XY118, R. fournieri, and R. vini comprise a separate cluster that appears most closely related to R. japonica and R. heilongjiangensis (Figure). According to the gene sequence–based criteria for taxonomic classification of new Rickettsia isolates (6,7), a Candidatus status could be assigned to XY118, so we named this species Candidatus Rickettsia xinyangensis.","html":"\u003cdiv\u003e A phylogenetic tree that we constructed using the 2,546-bp nucleotide sequence of these 5 genes concatenated showed that \u003cem\u003eRickettsia\u003c/em\u003e sp. XY118, \u003cem\u003eR. fournieri\u003c/em\u003e, and \u003cem\u003eR. vini\u003c/em\u003e comprise a separate cluster that appears most closely related to \u003cem\u003eR. japonica\u003c/em\u003e and \u003cem\u003eR. heilongjiangensis\u003c/em\u003e (\u003ca href=\"https://wwwnc.cdc.gov/eid/article/26/5/17-0294_article#tnF1\"\u003eFigure\u003c/a\u003e). According to the gene sequence–based criteria for taxonomic classification of new \u003cem\u003eRickettsia\u003c/em\u003e isolates (\u003ca href=\"https://wwwnc.cdc.gov/eid/article/26/5/17-0294_article#r6\"\u003e\u003cem\u003e6\u003c/em\u003e\u003c/a\u003e,\u003ca href=\"https://wwwnc.cdc.gov/eid/article/26/5/17-0294_article#r7\"\u003e\u003cem\u003e7\u003c/em\u003e\u003c/a\u003e), a \u003cem\u003eCandidatus\u003c/em\u003e status could be assigned to XY118, so we named this species \u003cem\u003eCandidatus\u003c/em\u003e Rickettsia xinyangensis.\u003cbr\u003e\u003cbr\u003e\u003c/div\u003e\u003cdiv\u003e\u003cbr\u003e\u003cbr\u003e\u003c/div\u003e"},"formal_styling":{"raw":"'Candidatus Rickettsia xinyangensis' Li et al., 2016","html":"\u0026#8220;\u003cspan data-type=name data-value=\"Candidatus Rickettsia xinyangensis\" data-id=\"495\" data-validated=0 data-correct=1 data-candidatus=1\u003e\u003ci\u003eCandidatus\u003c/i\u003e Rickettsia xinyangensis\u003c/span\u003e\u0026#8221; Li et al., 2016"},"etymology":"xinyangensis","nomenclatural_type":{"class":"unknown","id":null,"url":null,"uri":null,"display":null},"proposed_in":{"id":2468,"citation":"Li et al., 2016, Emerging Infectious Diseases","doi":"10.3201/eid2212.160962","url":"https://api.seqco.de/v1/publications/2468.json"},"classification":[{"id":753,"name":"Bacteria","rank":"domain","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":3437,"url":"https://api.seqco.de/v1/names/3437.json","uri":"https://seqco.de/i:3437","display":"Bacillus"},"created_at":"2021-09-30T17:32:32.936Z","updated_at":"2024-12-13T10:36:54.606Z","url":"https://api.seqco.de/v1/names/753.json","uri":"https://seqco.de/i:753"},{"id":791,"name":"Pseudomonadota","rank":"phylum","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":16834,"url":"https://api.seqco.de/v1/names/16834.json","uri":"https://seqco.de/i:16834","display":"Pseudomonas"},"created_at":"2021-10-22T14:21:06.631Z","updated_at":"2024-06-09T13:41:43.183Z","url":"https://api.seqco.de/v1/names/791.json","uri":"https://seqco.de/i:791"},{"id":847,"name":"Alphaproteobacteria","rank":"class","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":4750,"url":"https://api.seqco.de/v1/names/4750.json","uri":"https://seqco.de/i:4750","display":"Caulobacter"},"created_at":"2021-10-22T14:21:07.612Z","updated_at":"2024-12-30T01:54:14.378Z","url":"https://api.seqco.de/v1/names/847.json","uri":"https://seqco.de/i:847"},{"id":628,"name":"Rickettsiales","rank":"order","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"unknown","id":null,"url":null,"uri":null,"display":null},"created_at":"2021-07-04T12:02:55.928Z","updated_at":"2024-01-24T10:45:58.693Z","url":"https://api.seqco.de/v1/names/628.json","uri":"https://seqco.de/i:628"},{"id":14477,"name":"Rickettsiaceae","rank":"family","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"unknown","id":null,"url":null,"uri":null,"display":null},"created_at":"2021-10-22T14:36:04.224Z","updated_at":"2024-01-24T10:45:59.146Z","url":"https://api.seqco.de/v1/names/14477.json","uri":"https://seqco.de/i:14477"},{"id":52,"name":"Rickettsia","rank":"genus","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":17945,"url":"https://api.seqco.de/v1/names/17945.json","uri":"https://seqco.de/i:17945","display":"Rickettsia prowazekii"},"created_at":"2019-04-15T18:48:07.357Z","updated_at":"2024-01-24T10:45:59.410Z","url":"https://api.seqco.de/v1/names/52.json","uri":"https://seqco.de/i:52"}],"children":[],"qc_warnings":[{"scope":true,"failure":true,"message":"The name has a Candidatus modifier that should be removed","area":"nomenclature"},{"scope":true,"failure":true,"message":"The name is missing a type definition","rules":["16","17","26.3","18a"],"area":"nomenclature"},{"scope":true,"message":"The etymology of the name has not been provided","rules":["26.5"],"area":"nomenclature"}],"created_at":"2020-03-29T06:31:00.728Z","updated_at":"2022-09-09T23:24:20.516Z"}