{"response":{"status":"ok","message_type":"name"},"id":49637,"name":"Rhizobium quercicola","url":"https://api.seqco.de/v1/names/49637.json","uri":"https://seqco.de/i:49637","rank":"species","status_name":"Valid (SeqCode)","syllabication":"quer.ci'co.la","priority_date":"2025-03-20T16:17:56.124Z","description":{"raw":"Cells are Gram-negative, non-motile, catalase-positive, oxidase-positive, non-nitrogen-fixing, rod-shaped and aerobic bacteria. After 3 days of incubation at 28 °C on YMA medium, colonies are milk-white, circular, middle convex, and smooth. The growth temperature ranges from 4 to 37 °C (optimum 28 °C), pH 4.0–9.0 (optimum pH 7.0) and tolerates 4% (w/v) NaCl concentration (optimum under 2% NaCl). The production of hydrogen sulphide (H2S), and reduction of nitrate and nitrite are negative. Lack of nitrogen-fixation on N-free plates, absence of nif genes in the draft genome sequence, and by annotation results. In the API 20E kit, positive for 2-nitrophenyl-ßDgalactopyranoside, sodium pyruvate and L-arabinose. In the API 20NE kit, positive for esculin ferric citrate, 4-nitrophenyl-βDgalactopyranoside, D-mannose, D-mannitol, D-maltose and malic acid. In the API ZYM kit, positive for alkaline phosphatase, esterase (C4), leucine arylamidase, cystine arylamidase, valine arylamidase, trypsin, α-chymotrypsin, acid phosphatase, α-glucosidase, β-galactosidase, N-acetyl-β-glucosaminidase and β-glucosidase, and weakly positive for esterase lipase (C8), lipase (C14), naphthol-AS-BI-phosphohydrolase, α-galactosidase and α-mannosidase. The following carbon sources are utilized: dextrin, D-maltose, D-trehalose, D-cellobiose, sucrose, α-D-lactose, α-D-glucose, D-mannose, D-fructose, D-galactose, D-sorbitol, D-mannitol, D-arabitol, myo-inositol, L-glutamic acid, pectin, L-galactonic acid lactone, α-keto-glutaric acid, L-malic acid, tween 40, acetoacetic acid, acetic acid and malic acid as sole carbon sources. The major fatty acids are C16:0, C18:1 ω7c and/or C18:1 ω6c and C18:1 ω7c 11–methyl. The only respiratory quinone is Q-10. The polar lipids are diphosphatidyl glycerol (DPG), phosphatidyl glycerol (PG), phosphatidylethanolamine (PE), phosphatidylmonomethylethanolamine (PME), phosphatidylcholine (PC), two unidentified phospholipid (PL) and nine unidentified lipids (L). The G + C content of the genomic DNA is 64.47 mol %.","html":"\u003cdiv\u003eCells are Gram-negative, non-motile, catalase-positive, oxidase-positive, non-nitrogen-fixing, rod-shaped and aerobic bacteria. After 3 days of incubation at 28 °C on YMA medium, colonies are milk-white, circular, middle convex, and smooth. The growth temperature ranges from 4 to 37 °C (optimum 28 °C), pH 4.0–9.0 (optimum pH 7.0) and tolerates 4% (w/v) NaCl concentration (optimum under 2% NaCl). The production of hydrogen sulphide (H2S), and reduction of nitrate and nitrite are negative. Lack of nitrogen-fixation on N-free plates, absence of \u003cem\u003enif\u003c/em\u003e genes in the draft genome sequence, and by annotation results. In the API 20E kit, positive for 2-nitrophenyl-\u003cem\u003eß\u003c/em\u003eDgalactopyranoside, sodium pyruvate and L-arabinose. In the API 20NE kit, positive for esculin ferric citrate, 4-nitrophenyl-\u003cem\u003eβ\u003c/em\u003eDgalactopyranoside, D-mannose, D-mannitol, D-maltose and malic acid. In the API ZYM kit, positive for alkaline phosphatase, esterase (C4), leucine arylamidase, cystine arylamidase, valine arylamidase, trypsin, \u003cem\u003eα\u003c/em\u003e-chymotrypsin, acid phosphatase, \u003cem\u003eα\u003c/em\u003e-glucosidase, \u003cem\u003eβ\u003c/em\u003e-galactosidase, \u003cem\u003eN\u003c/em\u003e-acetyl-\u003cem\u003eβ\u003c/em\u003e-glucosaminidase and \u003cem\u003eβ\u003c/em\u003e-glucosidase, and weakly positive for esterase lipase (C8), lipase (C14), naphthol-AS-BI-phosphohydrolase, \u003cem\u003eα\u003c/em\u003e-galactosidase and \u003cem\u003eα\u003c/em\u003e-mannosidase. The following carbon sources are utilized: dextrin, D-maltose, D-trehalose, D-cellobiose, sucrose, \u003cem\u003eα\u003c/em\u003e-D-lactose, \u003cem\u003eα\u003c/em\u003e-D-glucose, D-mannose, D-fructose, D-galactose, D-sorbitol, D-mannitol, D-arabitol, myo-inositol, L-glutamic acid, pectin, L-galactonic acid lactone, \u003cem\u003eα\u003c/em\u003e-keto-glutaric acid, L-malic acid, tween 40, acetoacetic acid, acetic acid and malic acid as sole carbon sources. The major fatty acids are C16:0, C18:1 \u003cem\u003eω\u003c/em\u003e7\u003cem\u003ec\u003c/em\u003e and/or C18:1 \u003cem\u003eω\u003c/em\u003e6\u003cem\u003ec\u003c/em\u003e and C18:1 \u003cem\u003eω\u003c/em\u003e7\u003cem\u003ec\u003c/em\u003e 11–methyl. The only respiratory quinone is Q-10. The polar lipids are diphosphatidyl glycerol (DPG), phosphatidyl glycerol (PG), phosphatidylethanolamine (PE), phosphatidylmonomethylethanolamine (PME), phosphatidylcholine (PC), two unidentified phospholipid (PL) and nine unidentified lipids (L). The G + C content of the genomic DNA is 64.47 mol %.\u003c/div\u003e"},"formal_styling":{"raw":"Rhizobium quercicola Wang et al., 2022 (priority 2025)","html":"\u003cspan data-type=name data-value=\"Rhizobium quercicola\" data-id=\"49637\" data-validated=1 data-correct=1 data-candidatus=0\u003e\u003ci\u003eRhizobium quercicola\u003c/i\u003e\u003c/span\u003e Wang et al., 2022 (priority 2025)"},"etymology":"L. fem. n. quercus, oak; L. fem. suff. -cola, dweller; inhabitant; N.L. fem. n. quercicola, a dweller of oaks","nomenclatural_type":{"class":"Genome","id":3512,"url":"https://api.seqco.de/v1/genomes/3512.json","uri":"https://seqco.de/g:3512","display":"NCBI Assembly: GCF_021168455.1"},"proposed_in":{"id":3951,"citation":"Wang et al., 2022, Archives of Microbiology","doi":"10.1007/s00203-022-03188-y","url":"https://api.seqco.de/v1/publications/3951.json"},"classification":[{"id":753,"name":"Bacteria","rank":"domain","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":3437,"url":"https://api.seqco.de/v1/names/3437.json","uri":"https://seqco.de/i:3437","display":"Bacillus"},"created_at":"2021-09-30T17:32:32.936Z","updated_at":"2024-12-13T10:36:54.606Z","url":"https://api.seqco.de/v1/names/753.json","uri":"https://seqco.de/i:753"},{"id":791,"name":"Pseudomonadota","rank":"phylum","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":16834,"url":"https://api.seqco.de/v1/names/16834.json","uri":"https://seqco.de/i:16834","display":"Pseudomonas"},"created_at":"2021-10-22T14:21:06.631Z","updated_at":"2024-06-09T13:41:43.183Z","url":"https://api.seqco.de/v1/names/791.json","uri":"https://seqco.de/i:791"},{"id":847,"name":"Alphaproteobacteria","rank":"class","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":4750,"url":"https://api.seqco.de/v1/names/4750.json","uri":"https://seqco.de/i:4750","display":"Caulobacter"},"created_at":"2021-10-22T14:21:07.612Z","updated_at":"2024-12-30T01:54:14.378Z","url":"https://api.seqco.de/v1/names/847.json","uri":"https://seqco.de/i:847"},{"id":1528,"name":"Hyphomicrobiales","rank":"order","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":9667,"url":"https://api.seqco.de/v1/names/9667.json","uri":"https://seqco.de/i:9667","display":"Hyphomicrobium"},"created_at":"2021-10-22T14:21:43.611Z","updated_at":"2024-12-30T01:39:41.930Z","url":"https://api.seqco.de/v1/names/1528.json","uri":"https://seqco.de/i:1528"},{"id":1794,"name":"Rhizobiaceae","rank":"family","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":17197,"url":"https://api.seqco.de/v1/names/17197.json","uri":"https://seqco.de/i:17197","display":"Rhizobium"},"created_at":"2021-10-22T14:21:57.600Z","updated_at":"2025-02-23T21:37:36.371Z","url":"https://api.seqco.de/v1/names/1794.json","uri":"https://seqco.de/i:1794"},{"id":17197,"name":"Rhizobium","rank":"genus","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":17652,"url":"https://api.seqco.de/v1/names/17652.json","uri":"https://seqco.de/i:17652","display":"Rhizobium leguminosarum"},"created_at":"2021-10-22T14:39:40.401Z","updated_at":"2024-01-24T10:45:41.815Z","url":"https://api.seqco.de/v1/names/17197.json","uri":"https://seqco.de/i:17197"}],"children":[],"register":{"acc_url":"seqco.de/r:i_jsd202","title":"Rhizobium quercicola sp. nov.","priority_date":"2025-03-20T16:17:56.124Z","url":"https://api.seqco.de/v1/registers/r:i_jsd202.json","uri":"https://seqco.de/r:i_jsd202"},"created_at":"2024-12-06T10:42:36.007Z","updated_at":"2025-06-05T22:50:28.950Z"}