{"response":{"status":"ok","message_type":"name"},"id":51027,"name":"Planktophila jirickensis","url":"https://api.seqco.de/v1/names/51027.json","uri":"https://seqco.de/i:51027","rank":"species","status_name":"Valid (SeqCode)","syllabication":"ji.ri.cken'sis","priority_date":"2026-09-15T16:32:33.985Z","description":{"raw":"Etymology. It is named ‘jirickensis’ after the isolation source, a dystrophic water body, Jiřická Pond, Czech Republic.\nBrief description. Planktophila jirickensis JirE-27 (ENA accession number GCA_965267775) is a very rare organism, isolated from the Jiřická Pond, Czech Republic (date 2020-06-03). Recruitment analysis showed that its presence is restricted to this dystrophic fishpond. Genome characteristics are very similar to those of other Planktophila species.  It has a circular genome of 1,496,323 bp and a GC content of 48.9%. It encodes for one rRNA operon and 39 tRNAs, having a coding density of 95.57%. It can synthesize most amino acids, but it is auxotrophic for cysteine and asparagine. The genome contains genes encoding rhodopsins, but it is probably dependent on the exogenous retinal, as the last enzyme of the pathway (blh gene) is missing. No genes for flagella, pilus assembly or chemotaxis were annotated. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota; c__Actinomycetia; o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__. The closest cultivated representative is Planktophila rimovensis MRE-182, sharing an average nucleotide identity of 87.25%.","html":"\u003cdiv\u003eEtymology. It is named ‘jirickensis’ after the isolation source, a dystrophic water body, Jiřická Pond, Czech Republic.\u003c/div\u003e\u003cdiv\u003eBrief description. \u003cem\u003ePlanktophila jirickensis \u003c/em\u003eJirE-27 (ENA accession number GCA_965267775) is a very rare organism, isolated from the Jiřická Pond, Czech Republic (date 2020-06-03). Recruitment analysis showed that its presence is restricted to this dystrophic fishpond. Genome characteristics are very similar to those of other \u003cem\u003ePlanktophila\u003c/em\u003e species.  It has a circular genome of 1,496,323 bp and a GC content of 48.9%. It encodes for one rRNA operon and 39 tRNAs, having a coding density of 95.57%. It can synthesize most amino acids, but it is auxotrophic for cysteine and asparagine. The genome contains genes encoding rhodopsins, but it is probably dependent on the exogenous retinal, as the last enzyme of the pathway (\u003cem\u003eblh\u003c/em\u003e gene) is missing. No genes for flagella, pilus assembly or chemotaxis were annotated. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota; c__Actinomycetia; o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__. The closest cultivated representative is \u003cem\u003ePlanktophila rimovensis\u003c/em\u003e MRE-182, sharing an average nucleotide identity of 87.25%.\u003c/div\u003e"},"formal_styling":{"raw":"Planktophila jirickensis Chiriac et al., 2025 (priority 2026)","html":"\u003cspan data-type=name data-value=\"Planktophila jirickensis\" data-id=\"51027\" data-validated=1 data-correct=1 data-candidatus=0\u003e\u003ci\u003ePlanktophila jirickensis\u003c/i\u003e\u003c/span\u003e Chiriac et al., 2025 (priority 2026)"},"etymology":"L. fem. adj. jirickensis, of Jiricka, named for the dystrophic water body, Jiřická Pond, Czech Republic.","nomenclatural_type":{"class":"Genome","id":4106,"url":"https://api.seqco.de/v1/genomes/4106.json","uri":"https://seqco.de/g:4106","display":"NCBI Assembly: GCA_965267775.1"},"proposed_in":{"id":4807,"citation":"Chiriac et al., 2025, Microbiome","doi":"10.1186/s40168-025-02272-x","url":"https://api.seqco.de/v1/publications/4807.json"},"assigned_in":{"id":876,"citation":"Jezbera et al., 2009, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","doi":"10.1099/ijs.0.010199-0","url":"https://api.seqco.de/v1/publications/876.json"},"classification":[{"id":753,"name":"Bacteria","rank":"domain","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":3437,"url":"https://api.seqco.de/v1/names/3437.json","uri":"https://seqco.de/i:3437","display":"Bacillus"},"created_at":"2021-09-30T17:32:32.936Z","updated_at":"2024-12-13T10:36:54.606Z","url":"https://api.seqco.de/v1/names/753.json","uri":"https://seqco.de/i:753"},{"id":812,"name":"Actinomycetota","rank":"phylum","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2021-10-22T14:21:06.866Z","updated_at":"2024-06-06T17:52:11.291Z","url":"https://api.seqco.de/v1/names/812.json","uri":"https://seqco.de/i:812"},{"id":34427,"name":"Actinomycetes","rank":"class","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2024-01-24T10:46:48.721Z","updated_at":"2024-06-11T11:10:55.971Z","url":"https://api.seqco.de/v1/names/34427.json","uri":"https://seqco.de/i:34427"},{"id":23833,"name":"Nanopelagicales","rank":"order","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-04T16:55:53.055Z","updated_at":"2025-06-05T17:26:21.072Z","url":"https://api.seqco.de/v1/names/23833.json","uri":"https://seqco.de/i:23833"},{"id":23843,"name":"Nanopelagicaceae","rank":"family","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-11T18:25:38.461Z","updated_at":"2025-06-05T17:26:21.050Z","url":"https://api.seqco.de/v1/names/23843.json","uri":"https://seqco.de/i:23843"},{"id":23847,"name":"Planktophila","rank":"genus","status_name":"Valid (SeqCode)","priority_date":"2009-11-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":164,"url":"https://api.seqco.de/v1/names/164.json","uri":"https://seqco.de/i:164","display":"Planktophila limnetica"},"created_at":"2022-12-11T18:59:17.116Z","updated_at":"2025-06-05T17:26:21.016Z","url":"https://api.seqco.de/v1/names/23847.json","uri":"https://seqco.de/i:23847"}],"children":[],"register":{"acc_url":"seqco.de/r:pdwftyg3","title":"Register list for 26 new names including Aquilimus gen. nov.","priority_date":"2026-09-15T16:32:33.985Z","url":"https://api.seqco.de/v1/registers/r:pdwftyg3.json","uri":"https://seqco.de/r:pdwftyg3"},"created_at":"2025-05-30T13:07:45.907Z","updated_at":"2026-10-27T11:47:09.227Z"}