{"response":{"status":"ok","message_type":"name"},"id":51028,"name":"Planktophila glycosidica","url":"https://api.seqco.de/v1/names/51028.json","uri":"https://seqco.de/i:51028","rank":"species","status_name":"Valid (SeqCode)","syllabication":"gly.co.si.di'ca","priority_date":"2026-09-15T16:32:33.985Z","description":{"raw":"Etymology. It is named ‘glycosidica’ after the high number of carbohydrate active enzymes (CAZy) encoded by its genome.\nBrief description. Planktophila glycosidica MKE-14 (ENA accession number GCA_965267915) was isolated from the epilimnion (0.5m depth) of the eutrophic Klíčava Reservoir, Czech Rebublic (date 2021-04-08). Recruitment analysis showed that even though is not very abundant in environment, it is present in various eutrophic lakes and reservoirs in Europe, including beside Klíčava Reservoir, Lake Loclat (Switzerland), Lake Tiefwaren, Stechlin and Breiter Luzin (Germany), Římov and Žlutice Reservoirs (Czech Republic). It has a circular genome of 1,436,726 bp and a GC content of 45.89%. It encodes one rRNA operon and 38 tRNAs, having a coding density of 95.52%. The genome encodes for rhodopsins and the retinal biosynthesis pathway. It can produce most amino acids, but it is auxotrophic for asparagine. The genome encodes for a total of 54 CAZy belonging to 36 different protein families. The closest cultivated relative is Planktophila warneckii RE-85 with who is shares an average nucleotide identity of 71.1%. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota; c__Actinomycetia; o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__.","html":"\u003cdiv\u003eEtymology. It is named ‘glycosidica’ after the high number of carbohydrate active enzymes (CAZy) encoded by its genome.\u003c/div\u003e\u003cdiv\u003eBrief description. \u003cem\u003ePlanktophila glycosidica \u003c/em\u003eMKE-14 (ENA accession number GCA_965267915) was isolated from the epilimnion (0.5m depth) of the eutrophic Klíčava Reservoir, Czech Rebublic (date 2021-04-08). Recruitment analysis showed that even though is not very abundant in environment, it is present in various eutrophic lakes and reservoirs in Europe, including beside Klíčava Reservoir, Lake Loclat (Switzerland), Lake Tiefwaren, Stechlin and Breiter Luzin (Germany), Římov and Žlutice Reservoirs (Czech Republic). It has a circular genome of 1,436,726 bp and a GC content of 45.89%. It encodes one rRNA operon and 38 tRNAs, having a coding density of 95.52%. The genome encodes for rhodopsins and the retinal biosynthesis pathway. It can produce most amino acids, but it is auxotrophic for asparagine. The genome encodes for a total of 54 CAZy belonging to 36 different protein families. The closest cultivated relative is \u003cem\u003ePlanktophila warneckii \u003c/em\u003eRE-85 with who is shares an average nucleotide identity of 71.1%. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota; c__Actinomycetia; o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__.\u003c/div\u003e"},"formal_styling":{"raw":"Planktophila glycosidica Chiriac et al., 2025 (priority 2026)","html":"\u003cspan data-type=name data-value=\"Planktophila glycosidica\" data-id=\"51028\" data-validated=1 data-correct=1 data-candidatus=0\u003e\u003ci\u003ePlanktophila glycosidica\u003c/i\u003e\u003c/span\u003e Chiriac et al., 2025 (priority 2026)"},"etymology":"N.L. fem. adj. glycosidica, named for the high number of carbohydrate active enzymes (CAZy) encoded by its genome","nomenclatural_type":{"class":"Genome","id":4105,"url":"https://api.seqco.de/v1/genomes/4105.json","uri":"https://seqco.de/g:4105","display":"NCBI Assembly: GCA_965267915.1"},"proposed_in":{"id":4807,"citation":"Chiriac et al., 2025, Microbiome","doi":"10.1186/s40168-025-02272-x","url":"https://api.seqco.de/v1/publications/4807.json"},"assigned_in":{"id":876,"citation":"Jezbera et al., 2009, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","doi":"10.1099/ijs.0.010199-0","url":"https://api.seqco.de/v1/publications/876.json"},"classification":[{"id":753,"name":"Bacteria","rank":"domain","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":3437,"url":"https://api.seqco.de/v1/names/3437.json","uri":"https://seqco.de/i:3437","display":"Bacillus"},"created_at":"2021-09-30T17:32:32.936Z","updated_at":"2024-12-13T10:36:54.606Z","url":"https://api.seqco.de/v1/names/753.json","uri":"https://seqco.de/i:753"},{"id":812,"name":"Actinomycetota","rank":"phylum","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2021-10-22T14:21:06.866Z","updated_at":"2024-06-06T17:52:11.291Z","url":"https://api.seqco.de/v1/names/812.json","uri":"https://seqco.de/i:812"},{"id":34427,"name":"Actinomycetes","rank":"class","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2024-01-24T10:46:48.721Z","updated_at":"2024-06-11T11:10:55.971Z","url":"https://api.seqco.de/v1/names/34427.json","uri":"https://seqco.de/i:34427"},{"id":23833,"name":"Nanopelagicales","rank":"order","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-04T16:55:53.055Z","updated_at":"2025-06-05T17:26:21.072Z","url":"https://api.seqco.de/v1/names/23833.json","uri":"https://seqco.de/i:23833"},{"id":23843,"name":"Nanopelagicaceae","rank":"family","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-11T18:25:38.461Z","updated_at":"2025-06-05T17:26:21.050Z","url":"https://api.seqco.de/v1/names/23843.json","uri":"https://seqco.de/i:23843"},{"id":23847,"name":"Planktophila","rank":"genus","status_name":"Valid (SeqCode)","priority_date":"2009-11-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":164,"url":"https://api.seqco.de/v1/names/164.json","uri":"https://seqco.de/i:164","display":"Planktophila limnetica"},"created_at":"2022-12-11T18:59:17.116Z","updated_at":"2025-06-05T17:26:21.016Z","url":"https://api.seqco.de/v1/names/23847.json","uri":"https://seqco.de/i:23847"}],"children":[],"register":{"acc_url":"seqco.de/r:pdwftyg3","title":"Register list for 26 new names including Aquilimus gen. nov.","priority_date":"2026-09-15T16:32:33.985Z","url":"https://api.seqco.de/v1/registers/r:pdwftyg3.json","uri":"https://seqco.de/r:pdwftyg3"},"created_at":"2025-05-30T13:41:09.274Z","updated_at":"2026-10-27T11:47:09.204Z"}