{"response":{"status":"ok","message_type":"name"},"id":51469,"name":"Planktophila rimovensis","url":"https://api.seqco.de/v1/names/51469.json","uri":"https://seqco.de/i:51469","rank":"species","status_name":"Valid (SeqCode)","syllabication":"ri.mo.ven'sis","priority_date":"2026-09-15T16:32:33.985Z","description":{"raw":"Etymology. It is named ‘rimovensis’ after the isolation source, the eutrophic Římov Reservoir, Czech Republic.\nBrief description. Planktophila rimovensis MRE-182 (ENA accession number GCA_965267985) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has one circular genome with a size of 1,488,100 bp, a GC content of 48.8%, and a coding density of 95.67%. It encodes one rRNA operon and 37 tRNA genes. It encodes genes for actinorhodopsin and heliorhodopsin but is unable to synthesize retinal de novo due to the absence of the bhl gene. Also, it is auxotrophic for asparagine. Recruitment analysis showed that it was a very rare organism, occurring only in autumn in the Římov Reservoir. The closest relative is Planktophila jirickensis JirE-27 with which it shares an average nucleotide identity of 87.25%. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota; c__Actinomycetia; o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__.","html":"\u003cdiv\u003eEtymology. It is named ‘rimovensis’ after the isolation source, the eutrophic Římov Reservoir, Czech Republic.\u003c/div\u003e\u003cdiv\u003eBrief description. \u003cem\u003ePlanktophila rimovensis \u003c/em\u003eMRE-182 (ENA accession number GCA_965267985) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has one circular genome with a size of 1,488,100 bp, a GC content of 48.8%, and a coding density of 95.67%. It encodes one rRNA operon and 37 tRNA genes. It encodes genes for actinorhodopsin and heliorhodopsin but is unable to synthesize retinal \u003cem\u003ede novo\u003c/em\u003e due to the absence of the \u003cem\u003ebhl\u003c/em\u003e gene. Also, it is auxotrophic for asparagine. Recruitment analysis showed that it was a very rare organism, occurring only in autumn in the Římov Reservoir. The closest relative is \u003cem\u003ePlanktophila jirickensis\u003c/em\u003e JirE-27 with which it shares an average nucleotide identity of 87.25%. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota; c__Actinomycetia; o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__.\u003c/div\u003e"},"formal_styling":{"raw":"Planktophila rimovensis Chiriac et al., 2025 (priority 2026)","html":"\u003cspan data-type=name data-value=\"Planktophila rimovensis\" data-id=\"51469\" data-validated=1 data-correct=1 data-candidatus=0\u003e\u003ci\u003ePlanktophila rimovensis\u003c/i\u003e\u003c/span\u003e Chiriac et al., 2025 (priority 2026)"},"etymology":"N.L. fem. adj. rimovensis, of Rimov, pertaining to the Římov Reservoir, Czech Republic, the isolation source of the species","nomenclatural_type":{"class":"Genome","id":4109,"url":"https://api.seqco.de/v1/genomes/4109.json","uri":"https://seqco.de/g:4109","display":"NCBI Assembly: GCA_965267985.1"},"proposed_in":{"id":4807,"citation":"Chiriac et al., 2025, Microbiome","doi":"10.1186/s40168-025-02272-x","url":"https://api.seqco.de/v1/publications/4807.json"},"classification":[{"id":753,"name":"Bacteria","rank":"domain","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":3437,"url":"https://api.seqco.de/v1/names/3437.json","uri":"https://seqco.de/i:3437","display":"Bacillus"},"created_at":"2021-09-30T17:32:32.936Z","updated_at":"2024-12-13T10:36:54.606Z","url":"https://api.seqco.de/v1/names/753.json","uri":"https://seqco.de/i:753"},{"id":812,"name":"Actinomycetota","rank":"phylum","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2021-10-22T14:21:06.866Z","updated_at":"2024-06-06T17:52:11.291Z","url":"https://api.seqco.de/v1/names/812.json","uri":"https://seqco.de/i:812"},{"id":34427,"name":"Actinomycetes","rank":"class","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2024-01-24T10:46:48.721Z","updated_at":"2024-06-11T11:10:55.971Z","url":"https://api.seqco.de/v1/names/34427.json","uri":"https://seqco.de/i:34427"},{"id":23833,"name":"Nanopelagicales","rank":"order","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-04T16:55:53.055Z","updated_at":"2025-06-05T17:26:21.072Z","url":"https://api.seqco.de/v1/names/23833.json","uri":"https://seqco.de/i:23833"},{"id":23843,"name":"Nanopelagicaceae","rank":"family","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-11T18:25:38.461Z","updated_at":"2025-06-05T17:26:21.050Z","url":"https://api.seqco.de/v1/names/23843.json","uri":"https://seqco.de/i:23843"},{"id":23847,"name":"Planktophila","rank":"genus","status_name":"Valid (SeqCode)","priority_date":"2009-11-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":164,"url":"https://api.seqco.de/v1/names/164.json","uri":"https://seqco.de/i:164","display":"Planktophila limnetica"},"created_at":"2022-12-11T18:59:17.116Z","updated_at":"2025-06-05T17:26:21.016Z","url":"https://api.seqco.de/v1/names/23847.json","uri":"https://seqco.de/i:23847"}],"children":[],"register":{"acc_url":"seqco.de/r:pdwftyg3","title":"Register list for 26 new names including Aquilimus gen. nov.","priority_date":"2026-09-15T16:32:33.985Z","url":"https://api.seqco.de/v1/registers/r:pdwftyg3.json","uri":"https://seqco.de/r:pdwftyg3"},"created_at":"2025-08-04T08:36:00.967Z","updated_at":"2026-10-27T11:47:09.576Z"}