{"response":{"status":"ok","message_type":"name"},"id":51470,"name":"Planktophila primivernalis","url":"https://api.seqco.de/v1/names/51470.json","uri":"https://seqco.de/i:51470","rank":"species","status_name":"Valid (SeqCode)","syllabication":"pri.mi.ver.na'lis","priority_date":"2026-09-15T16:32:33.985Z","description":{"raw":"Etymology. It is named from ‘prima vera’, meaning early spring in Latin, due to its occurrence in lakes during spring months.\nBrief description. Planktophila primaveralis MRE-185 (ENA accession number GCA_965267735) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has a circular genome with a size of 1,474,018 bp, a GC content of 47.25% and a coding density of 95.94%. It encodes for one rRNA operon and 37 tRNA genes. It encodes actinorhodopsin and heliorhodopsin, as well as the ability to de novo synthesize retinal. It can synthesize most amino acids, except asparagine. The closest relative is Planktophila aestivalis MRE-130 with whom it shares an average nucleotide identity of 86.8%. Recruitment analysis showed that it was present in Římov, Žlutice and Klíčava Reservoirs (Czech Republic) during the spring months, and at the coast of the Baltic Sea. It is usually present in the surface waters, but in Římov Reservoir it is also present in hypolimnion. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota;c__Actinomycetia; o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila; s__.","html":"\u003cdiv\u003eEtymology. It is named from ‘prima vera’, meaning early spring in Latin, due to its occurrence in lakes during spring months.\u003c/div\u003e\u003cdiv\u003eBrief description. \u003cem\u003ePlanktophila primaveralis \u003c/em\u003eMRE-185 (ENA accession number GCA_965267735) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has a circular genome with a size of 1,474,018 bp, a GC content of 47.25% and a coding density of 95.94%. It encodes for one rRNA operon and 37 tRNA genes. It encodes actinorhodopsin and heliorhodopsin, as well as the ability to \u003cem\u003ede novo\u003c/em\u003e synthesize retinal. It can synthesize most amino acids, except asparagine. The closest relative is \u003cem\u003ePlanktophila aestivalis\u003c/em\u003e MRE-130 with whom it shares an average nucleotide identity of 86.8%. Recruitment analysis showed that it was present in Římov, Žlutice and Klíčava Reservoirs (Czech Republic) during the spring months, and at the coast of the Baltic Sea. It is usually present in the surface waters, but in Římov Reservoir it is also present in hypolimnion. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota;c__Actinomycetia; o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila; s__.\u003c/div\u003e"},"formal_styling":{"raw":"Planktophila primivernalis Chiriac et al., 2025 (priority 2026)","html":"\u003cspan data-type=name data-value=\"Planktophila primivernalis\" data-id=\"51470\" data-validated=1 data-correct=1 data-candidatus=0\u003e\u003ci\u003ePlanktophila primivernalis\u003c/i\u003e\u003c/span\u003e Chiriac et al., 2025 (priority 2026)"},"etymology":"L. masc. adj. primus, first or foremost; L. fem. adj. vernalis, of spring; N.L. fem. adj. primivernalis, of early spring, due to its occurrence in lakes during spring months","nomenclatural_type":{"class":"Genome","id":4084,"url":"https://api.seqco.de/v1/genomes/4084.json","uri":"https://seqco.de/g:4084","display":"NCBI Assembly: GCA_965267735.1"},"proposed_in":{"id":4807,"citation":"Chiriac et al., 2025, Microbiome","doi":"10.1186/s40168-025-02272-x","url":"https://api.seqco.de/v1/publications/4807.json"},"classification":[{"id":753,"name":"Bacteria","rank":"domain","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":3437,"url":"https://api.seqco.de/v1/names/3437.json","uri":"https://seqco.de/i:3437","display":"Bacillus"},"created_at":"2021-09-30T17:32:32.936Z","updated_at":"2024-12-13T10:36:54.606Z","url":"https://api.seqco.de/v1/names/753.json","uri":"https://seqco.de/i:753"},{"id":812,"name":"Actinomycetota","rank":"phylum","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2021-10-22T14:21:06.866Z","updated_at":"2024-06-06T17:52:11.291Z","url":"https://api.seqco.de/v1/names/812.json","uri":"https://seqco.de/i:812"},{"id":34427,"name":"Actinomycetes","rank":"class","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2024-01-24T10:46:48.721Z","updated_at":"2024-06-11T11:10:55.971Z","url":"https://api.seqco.de/v1/names/34427.json","uri":"https://seqco.de/i:34427"},{"id":23833,"name":"Nanopelagicales","rank":"order","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-04T16:55:53.055Z","updated_at":"2025-06-05T17:26:21.072Z","url":"https://api.seqco.de/v1/names/23833.json","uri":"https://seqco.de/i:23833"},{"id":23843,"name":"Nanopelagicaceae","rank":"family","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-11T18:25:38.461Z","updated_at":"2025-06-05T17:26:21.050Z","url":"https://api.seqco.de/v1/names/23843.json","uri":"https://seqco.de/i:23843"},{"id":23847,"name":"Planktophila","rank":"genus","status_name":"Valid (SeqCode)","priority_date":"2009-11-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":164,"url":"https://api.seqco.de/v1/names/164.json","uri":"https://seqco.de/i:164","display":"Planktophila limnetica"},"created_at":"2022-12-11T18:59:17.116Z","updated_at":"2025-06-05T17:26:21.016Z","url":"https://api.seqco.de/v1/names/23847.json","uri":"https://seqco.de/i:23847"}],"children":[],"register":{"acc_url":"seqco.de/r:pdwftyg3","title":"Register list for 26 new names including Aquilimus gen. nov.","priority_date":"2026-09-15T16:32:33.985Z","url":"https://api.seqco.de/v1/registers/r:pdwftyg3.json","uri":"https://seqco.de/r:pdwftyg3"},"created_at":"2025-08-04T08:37:54.454Z","updated_at":"2026-10-27T11:47:09.616Z"}