{"response":{"status":"ok","message_type":"name"},"id":51471,"name":"Planktophila polyoliphila","url":"https://api.seqco.de/v1/names/51471.json","uri":"https://seqco.de/i:51471","rank":"species","status_name":"Valid (SeqCode)","syllabication":"po.ly.o.li.phi'la","priority_date":"2026-09-15T16:32:33.985Z","description":{"raw":"Etymology. It is named ‘polyoliphila’ from the membrane transporters encoded by the genome of this isolate, specific for polyols.\nBrief description. Planktophila polyoliphila MRE-193 (ENA accession number GCA_965267955) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has a circular genome of 1,347,427 bp, a GC content of 45% and a coding density of 96.16%. It encodes one rRNA operon and 40 tRNA genes. It encodes for both actinorhodopsin and heliorhodopsin, but it lacks the last gene involved in the biosynthesis of retinal, the bhl gene. It encodes membrane transporters for erythriol. It is a relatively abundant and widespread species, encountered in rives, reservoirs and lakes, including the Žlutice, Římov and Klíčava Reservoirs (Czech Republic), Lake Bissett (Canada), Lake Michigan (USA), Torrens River (Australia) etc. The closest cultivated relative to this species is Planktophila limneticus MMS-VB-114, sharing an average nucleotide identity of 81.9%. The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota;c__Actinomycetia; o__Nanopelagicales;f__Nanopelagicaceae; g__Planktophila; s__.","html":"\u003cdiv\u003eEtymology. It is named ‘polyoliphila’ from the membrane transporters encoded by the genome of this isolate, specific for polyols.\u003c/div\u003e\u003cdiv\u003eBrief description. \u003cem\u003ePlanktophila polyoliphila\u003c/em\u003e MRE-193 (ENA accession number GCA_965267955) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has a circular genome of 1,347,427 bp, a GC content of 45% and a coding density of 96.16%. It encodes one rRNA operon and 40 tRNA genes. It encodes for both actinorhodopsin and heliorhodopsin, but it lacks the last gene involved in the biosynthesis of retinal, the \u003cem\u003ebhl\u003c/em\u003e gene. It encodes membrane transporters for erythriol. It is a relatively abundant and widespread species, encountered in rives, reservoirs and lakes, including the Žlutice, Římov and Klíčava Reservoirs (Czech Republic), Lake Bissett (Canada), Lake Michigan (USA), Torrens River (Australia) etc. The closest cultivated relative to this species is \u003cem\u003ePlanktophila limneticus\u003c/em\u003e MMS-VB-114, sharing an average nucleotide identity of 81.9%. The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota;c__Actinomycetia; o__Nanopelagicales;f__Nanopelagicaceae; g__Planktophila; s__.\u003c/div\u003e"},"formal_styling":{"raw":"Planktophila polyoliphila Chiriac et al., 2025 (priority 2026)","html":"\u003cspan data-type=name data-value=\"Planktophila polyoliphila\" data-id=\"51471\" data-validated=1 data-correct=1 data-candidatus=0\u003e\u003ci\u003ePlanktophila polyoliphila\u003c/i\u003e\u003c/span\u003e Chiriac et al., 2025 (priority 2026)"},"etymology":"N.L. neut. n. polyolum, polyol, referring to the polyol-specific membrane transporters encoded by this species' genome; N.L. fem. adj. suff. -phila, loving; N.L. fem. adj. polyoliphila, a polyol-loving organism","nomenclatural_type":{"class":"Genome","id":4108,"url":"https://api.seqco.de/v1/genomes/4108.json","uri":"https://seqco.de/g:4108","display":"NCBI Assembly: GCA_965267955.1"},"proposed_in":{"id":4807,"citation":"Chiriac et al., 2025, Microbiome","doi":"10.1186/s40168-025-02272-x","url":"https://api.seqco.de/v1/publications/4807.json"},"classification":[{"id":753,"name":"Bacteria","rank":"domain","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":3437,"url":"https://api.seqco.de/v1/names/3437.json","uri":"https://seqco.de/i:3437","display":"Bacillus"},"created_at":"2021-09-30T17:32:32.936Z","updated_at":"2024-12-13T10:36:54.606Z","url":"https://api.seqco.de/v1/names/753.json","uri":"https://seqco.de/i:753"},{"id":812,"name":"Actinomycetota","rank":"phylum","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2021-10-22T14:21:06.866Z","updated_at":"2024-06-06T17:52:11.291Z","url":"https://api.seqco.de/v1/names/812.json","uri":"https://seqco.de/i:812"},{"id":34427,"name":"Actinomycetes","rank":"class","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2024-01-24T10:46:48.721Z","updated_at":"2024-06-11T11:10:55.971Z","url":"https://api.seqco.de/v1/names/34427.json","uri":"https://seqco.de/i:34427"},{"id":23833,"name":"Nanopelagicales","rank":"order","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-04T16:55:53.055Z","updated_at":"2025-06-05T17:26:21.072Z","url":"https://api.seqco.de/v1/names/23833.json","uri":"https://seqco.de/i:23833"},{"id":23843,"name":"Nanopelagicaceae","rank":"family","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-11T18:25:38.461Z","updated_at":"2025-06-05T17:26:21.050Z","url":"https://api.seqco.de/v1/names/23843.json","uri":"https://seqco.de/i:23843"},{"id":23847,"name":"Planktophila","rank":"genus","status_name":"Valid (SeqCode)","priority_date":"2009-11-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":164,"url":"https://api.seqco.de/v1/names/164.json","uri":"https://seqco.de/i:164","display":"Planktophila limnetica"},"created_at":"2022-12-11T18:59:17.116Z","updated_at":"2025-06-05T17:26:21.016Z","url":"https://api.seqco.de/v1/names/23847.json","uri":"https://seqco.de/i:23847"}],"children":[],"register":{"acc_url":"seqco.de/r:pdwftyg3","title":"Register list for 26 new names including Aquilimus gen. nov.","priority_date":"2026-09-15T16:32:33.985Z","url":"https://api.seqco.de/v1/registers/r:pdwftyg3.json","uri":"https://seqco.de/r:pdwftyg3"},"created_at":"2025-08-04T08:42:57.422Z","updated_at":"2026-10-27T11:47:09.344Z"}