{"response":{"status":"ok","message_type":"name"},"id":51474,"name":"Planktophila thermolimnae","url":"https://api.seqco.de/v1/names/51474.json","uri":"https://seqco.de/i:51474","rank":"species","status_name":"Valid (SeqCode)","syllabication":"ther.mo.lim'na.e","priority_date":"2026-09-15T16:32:33.985Z","description":{"raw":"Etymology. It is named ‘thermolimna’ after the Greek words ‘thermo’ meaning heat or warm, and ‘limna’, referring to a lake or standing water.\nBried description. Planktophila thermolimna MRE-226 (ENA accession number GCA_965267965) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,436,178 bp, a GC content of 48.89%, and a coding density of 96%. It encodes for one rRNA operon and 39 tRNA genes. It encodes for both actinorhodopsin and heliorhodopsin, as well as the capacity to de novo synthesize retinal. It encodes for both oxygenic and anoxygenic parts of the pentose phosphate pathway. It can synthesize most amino acids, being auxotrophic for asparagine. Recruitment analysis indicates that the species prefers warm, epilimnetic waters, being present in spring and summer in Římov, Žlutice and Klíčava Reservoirs. The closest isolated relative is Planktophila calida RoE-11, with whom shared an average nucleotide identity of 89.53%. The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae; g__Planktophila; s__.","html":"\u003cdiv\u003eEtymology. It is named ‘thermolimna’ after the Greek words ‘thermo’ meaning heat or warm, and ‘limna’, referring to a lake or standing water.\u003c/div\u003e\u003cdiv\u003eBried description. \u003cem\u003ePlanktophila thermolimna \u003c/em\u003eMRE-226 (ENA accession number GCA_965267965) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,436,178 bp, a GC content of 48.89%, and a coding density of 96%. It encodes for one rRNA operon and 39 tRNA genes. It encodes for both actinorhodopsin and heliorhodopsin, as well as the capacity to \u003cem\u003ede novo\u003c/em\u003e synthesize retinal. It encodes for both oxygenic and anoxygenic parts of the pentose phosphate pathway. It can synthesize most amino acids, being auxotrophic for asparagine. Recruitment analysis indicates that the species prefers warm, epilimnetic waters, being present in spring and summer in Římov, Žlutice and Klíčava Reservoirs. The closest isolated relative is \u003cem\u003ePlanktophila calida\u003c/em\u003e RoE-11, with whom shared an average nucleotide identity of 89.53%. The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae; g__Planktophila; s__.\u003c/div\u003e"},"formal_styling":{"raw":"Planktophila thermolimnae Chiriac et al., 2025 (priority 2026)","html":"\u003cspan data-type=name data-value=\"Planktophila thermolimnae\" data-id=\"51474\" data-validated=1 data-correct=1 data-candidatus=0\u003e\u003ci\u003ePlanktophila thermolimnae\u003c/i\u003e\u003c/span\u003e Chiriac et al., 2025 (priority 2026)"},"etymology":"Gr. masc. adj. thermos, hot; Gr. fem. n. limne, lake; N.L. fem. adj. thermolimnae, of a hot lake or standing body of water","nomenclatural_type":{"class":"Genome","id":4090,"url":"https://api.seqco.de/v1/genomes/4090.json","uri":"https://seqco.de/g:4090","display":"NCBI Assembly: GCA_965267965.1"},"proposed_in":{"id":4807,"citation":"Chiriac et al., 2025, Microbiome","doi":"10.1186/s40168-025-02272-x","url":"https://api.seqco.de/v1/publications/4807.json"},"classification":[{"id":753,"name":"Bacteria","rank":"domain","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":3437,"url":"https://api.seqco.de/v1/names/3437.json","uri":"https://seqco.de/i:3437","display":"Bacillus"},"created_at":"2021-09-30T17:32:32.936Z","updated_at":"2024-12-13T10:36:54.606Z","url":"https://api.seqco.de/v1/names/753.json","uri":"https://seqco.de/i:753"},{"id":812,"name":"Actinomycetota","rank":"phylum","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2021-10-22T14:21:06.866Z","updated_at":"2024-06-06T17:52:11.291Z","url":"https://api.seqco.de/v1/names/812.json","uri":"https://seqco.de/i:812"},{"id":34427,"name":"Actinomycetes","rank":"class","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2024-01-24T10:46:48.721Z","updated_at":"2024-06-11T11:10:55.971Z","url":"https://api.seqco.de/v1/names/34427.json","uri":"https://seqco.de/i:34427"},{"id":23833,"name":"Nanopelagicales","rank":"order","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-04T16:55:53.055Z","updated_at":"2025-06-05T17:26:21.072Z","url":"https://api.seqco.de/v1/names/23833.json","uri":"https://seqco.de/i:23833"},{"id":23843,"name":"Nanopelagicaceae","rank":"family","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-11T18:25:38.461Z","updated_at":"2025-06-05T17:26:21.050Z","url":"https://api.seqco.de/v1/names/23843.json","uri":"https://seqco.de/i:23843"},{"id":23847,"name":"Planktophila","rank":"genus","status_name":"Valid (SeqCode)","priority_date":"2009-11-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":164,"url":"https://api.seqco.de/v1/names/164.json","uri":"https://seqco.de/i:164","display":"Planktophila limnetica"},"created_at":"2022-12-11T18:59:17.116Z","updated_at":"2025-06-05T17:26:21.016Z","url":"https://api.seqco.de/v1/names/23847.json","uri":"https://seqco.de/i:23847"}],"children":[],"register":{"acc_url":"seqco.de/r:pdwftyg3","title":"Register list for 26 new names including Aquilimus gen. nov.","priority_date":"2026-09-15T16:32:33.985Z","url":"https://api.seqco.de/v1/registers/r:pdwftyg3.json","uri":"https://seqco.de/r:pdwftyg3"},"created_at":"2025-08-04T08:50:06.907Z","updated_at":"2026-10-27T11:47:09.411Z"}