{"response":{"status":"ok","message_type":"name"},"id":51475,"name":"Planktophila rara","url":"https://api.seqco.de/v1/names/51475.json","uri":"https://seqco.de/i:51475","rank":"species","status_name":"Valid (SeqCode)","syllabication":"ra'ra","priority_date":"2026-09-15T16:32:33.985Z","description":{"raw":"Etymology. It is named ‘rarus’ from the Latin word meaning rare, indicating its low abundance and distribution in the environment.\nBrief description. Planktophila rarus MRE-26 (ENA accession number GCA_965268205) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-04-06) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,468,350 bp, a GC content of 47.5%, and a coding density of 95.7%. It encodes one rRNA operon and 39 tRNA genes. It encodes for both actinorhodopsin and heliorhodopsin, as well as the capacity to de novo synthesize retinal. It encodes for both oxygenic and anoxygenic parts of the pentose phosphate pathway. It can synthesize most amino acids, being auxotrophic for asparagine. Recruitment analysis indicates a very restrictive distribution, specifically the epilimnetic waters of Římov Reservoir during spring. The closest cultivated species is Planktophila aestivalis MRE-130, having an average nucleotide identity of 86.5%. The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae; g__Planktophila; s__.","html":"\u003cdiv\u003eEtymology. It is named ‘rarus’ from the Latin word meaning rare, indicating its low abundance and distribution in the environment.\u003c/div\u003e\u003cdiv\u003eBrief description. \u003cem\u003ePlanktophila rarus \u003c/em\u003eMRE-26 (ENA accession number GCA_965268205) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-04-06) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,468,350 bp, a GC content of 47.5%, and a coding density of 95.7%. It encodes one rRNA operon and 39 tRNA genes. It encodes for both actinorhodopsin and heliorhodopsin, as well as the capacity to \u003cem\u003ede novo\u003c/em\u003e synthesize retinal. It encodes for both oxygenic and anoxygenic parts of the pentose phosphate pathway. It can synthesize most amino acids, being auxotrophic for asparagine. Recruitment analysis indicates a very restrictive distribution, specifically the epilimnetic waters of Římov Reservoir during spring. The closest cultivated species is \u003cem\u003ePlanktophila aestivalis\u003c/em\u003e MRE-130, having an average nucleotide identity of 86.5%. The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae; g__Planktophila; s__.\u003c/div\u003e"},"formal_styling":{"raw":"Planktophila rara Chiriac et al., 2025 (priority 2026)","html":"\u003cspan data-type=name data-value=\"Planktophila rara\" data-id=\"51475\" data-validated=1 data-correct=1 data-candidatus=0\u003e\u003ci\u003ePlanktophila rara\u003c/i\u003e\u003c/span\u003e Chiriac et al., 2025 (priority 2026)"},"etymology":"L. fem. adj. rara, rare, indicating its low abundance and distribution in the environment","nomenclatural_type":{"class":"Genome","id":4091,"url":"https://api.seqco.de/v1/genomes/4091.json","uri":"https://seqco.de/g:4091","display":"NCBI Assembly: GCA_965268205.1"},"proposed_in":{"id":4807,"citation":"Chiriac et al., 2025, Microbiome","doi":"10.1186/s40168-025-02272-x","url":"https://api.seqco.de/v1/publications/4807.json"},"classification":[{"id":753,"name":"Bacteria","rank":"domain","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":3437,"url":"https://api.seqco.de/v1/names/3437.json","uri":"https://seqco.de/i:3437","display":"Bacillus"},"created_at":"2021-09-30T17:32:32.936Z","updated_at":"2024-12-13T10:36:54.606Z","url":"https://api.seqco.de/v1/names/753.json","uri":"https://seqco.de/i:753"},{"id":812,"name":"Actinomycetota","rank":"phylum","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2021-10-22T14:21:06.866Z","updated_at":"2024-06-06T17:52:11.291Z","url":"https://api.seqco.de/v1/names/812.json","uri":"https://seqco.de/i:812"},{"id":34427,"name":"Actinomycetes","rank":"class","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2024-01-24T10:46:48.721Z","updated_at":"2024-06-11T11:10:55.971Z","url":"https://api.seqco.de/v1/names/34427.json","uri":"https://seqco.de/i:34427"},{"id":23833,"name":"Nanopelagicales","rank":"order","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-04T16:55:53.055Z","updated_at":"2025-06-05T17:26:21.072Z","url":"https://api.seqco.de/v1/names/23833.json","uri":"https://seqco.de/i:23833"},{"id":23843,"name":"Nanopelagicaceae","rank":"family","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-11T18:25:38.461Z","updated_at":"2025-06-05T17:26:21.050Z","url":"https://api.seqco.de/v1/names/23843.json","uri":"https://seqco.de/i:23843"},{"id":23847,"name":"Planktophila","rank":"genus","status_name":"Valid (SeqCode)","priority_date":"2009-11-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":164,"url":"https://api.seqco.de/v1/names/164.json","uri":"https://seqco.de/i:164","display":"Planktophila limnetica"},"created_at":"2022-12-11T18:59:17.116Z","updated_at":"2025-06-05T17:26:21.016Z","url":"https://api.seqco.de/v1/names/23847.json","uri":"https://seqco.de/i:23847"}],"children":[],"register":{"acc_url":"seqco.de/r:pdwftyg3","title":"Register list for 26 new names including Aquilimus gen. nov.","priority_date":"2026-09-15T16:32:33.985Z","url":"https://api.seqco.de/v1/registers/r:pdwftyg3.json","uri":"https://seqco.de/r:pdwftyg3"},"created_at":"2025-08-04T08:53:11.323Z","updated_at":"2026-10-27T11:47:09.366Z"}