{"response":{"status":"ok","message_type":"name"},"id":51476,"name":"Planktophila hypolimnetica","url":"https://api.seqco.de/v1/names/51476.json","uri":"https://seqco.de/i:51476","rank":"species","status_name":"Valid (SeqCode)","syllabication":"hy.po.lim.ne.ti'ca","priority_date":"2026-09-15T16:32:33.985Z","description":{"raw":"Etymology. It is named ‘hypolimnetica’ after the water layer from which it was isolated from Římov Reservoir, Czech Republic.\nBrief description. Planktophila hypolimnetica MRH-37 (ENA accession number GCA_965268225) was isolated from the hypolimnion (30m depth) of Římov Reservoir, Czech Republic (date: 2021-04-06) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,381,774 bp, a GC content of 48.46%, and a coding density of 95.9%. It encodes one rRNA operon and 38 tRNA genes. It encodes for both actinorhodopsin and heliorhodopsin, as well as the capacity to de novo synthesize retinal. It encodes for both oxygenic and anoxygenic parts of the pentose phosphate pathway. Recruitment analysis showed that it is present both in the epilimnion and hypolimnion of Římov Reservoir. The closest cultivated species is Planktophila grossartii MRE-195, having an average nucleotide identity of 86.8%. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila; s__.","html":"\u003cdiv\u003eEtymology. It is named ‘hypolimnetica’ after the water layer from which it was isolated from Římov Reservoir, Czech Republic.\u003c/div\u003e\u003cdiv\u003eBrief description. \u003cem\u003ePlanktophila hypolimnetica \u003c/em\u003eMRH-37 (ENA accession number GCA_965268225) was isolated from the hypolimnion (30m depth) of Římov Reservoir, Czech Republic (date: 2021-04-06) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,381,774 bp, a GC content of 48.46%, and a coding density of 95.9%. It encodes one rRNA operon and 38 tRNA genes. It encodes for both actinorhodopsin and heliorhodopsin, as well as the capacity to \u003cem\u003ede novo\u003c/em\u003e synthesize retinal. It encodes for both oxygenic and anoxygenic parts of the pentose phosphate pathway. Recruitment analysis showed that it is present both in the epilimnion and hypolimnion of Římov Reservoir. The closest cultivated species is \u003cem\u003ePlanktophila grossartii\u003c/em\u003e MRE-195, having an average nucleotide identity of 86.8%. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila; s__.\u003c/div\u003e"},"formal_styling":{"raw":"Planktophila hypolimnetica Chiriac et al., 2025 (priority 2026)","html":"\u003cspan data-type=name data-value=\"Planktophila hypolimnetica\" data-id=\"51476\" data-validated=1 data-correct=1 data-candidatus=0\u003e\u003ci\u003ePlanktophila hypolimnetica\u003c/i\u003e\u003c/span\u003e Chiriac et al., 2025 (priority 2026)"},"etymology":"Gr. prep. hypo, below, under; N.L. fem. adj. limnetica, of a lake; N.L. fem. adj. hypolimnetica, from the hypolimnion of lakes","nomenclatural_type":{"class":"Genome","id":4092,"url":"https://api.seqco.de/v1/genomes/4092.json","uri":"https://seqco.de/g:4092","display":"NCBI Assembly: GCA_965268225.1"},"proposed_in":{"id":4807,"citation":"Chiriac et al., 2025, Microbiome","doi":"10.1186/s40168-025-02272-x","url":"https://api.seqco.de/v1/publications/4807.json"},"classification":[{"id":753,"name":"Bacteria","rank":"domain","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":3437,"url":"https://api.seqco.de/v1/names/3437.json","uri":"https://seqco.de/i:3437","display":"Bacillus"},"created_at":"2021-09-30T17:32:32.936Z","updated_at":"2024-12-13T10:36:54.606Z","url":"https://api.seqco.de/v1/names/753.json","uri":"https://seqco.de/i:753"},{"id":812,"name":"Actinomycetota","rank":"phylum","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2021-10-22T14:21:06.866Z","updated_at":"2024-06-06T17:52:11.291Z","url":"https://api.seqco.de/v1/names/812.json","uri":"https://seqco.de/i:812"},{"id":34427,"name":"Actinomycetes","rank":"class","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2024-01-24T10:46:48.721Z","updated_at":"2024-06-11T11:10:55.971Z","url":"https://api.seqco.de/v1/names/34427.json","uri":"https://seqco.de/i:34427"},{"id":23833,"name":"Nanopelagicales","rank":"order","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-04T16:55:53.055Z","updated_at":"2025-06-05T17:26:21.072Z","url":"https://api.seqco.de/v1/names/23833.json","uri":"https://seqco.de/i:23833"},{"id":23843,"name":"Nanopelagicaceae","rank":"family","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-11T18:25:38.461Z","updated_at":"2025-06-05T17:26:21.050Z","url":"https://api.seqco.de/v1/names/23843.json","uri":"https://seqco.de/i:23843"},{"id":23847,"name":"Planktophila","rank":"genus","status_name":"Valid (SeqCode)","priority_date":"2009-11-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":164,"url":"https://api.seqco.de/v1/names/164.json","uri":"https://seqco.de/i:164","display":"Planktophila limnetica"},"created_at":"2022-12-11T18:59:17.116Z","updated_at":"2025-06-05T17:26:21.016Z","url":"https://api.seqco.de/v1/names/23847.json","uri":"https://seqco.de/i:23847"}],"children":[],"register":{"acc_url":"seqco.de/r:pdwftyg3","title":"Register list for 26 new names including Aquilimus gen. nov.","priority_date":"2026-09-15T16:32:33.985Z","url":"https://api.seqco.de/v1/registers/r:pdwftyg3.json","uri":"https://seqco.de/r:pdwftyg3"},"created_at":"2025-08-04T08:54:58.616Z","updated_at":"2026-10-27T11:47:09.698Z"}