{"response":{"status":"ok","message_type":"name"},"id":51479,"name":"Planktophila stagnalis","url":"https://api.seqco.de/v1/names/51479.json","uri":"https://seqco.de/i:51479","rank":"species","status_name":"Valid (SeqCode)","syllabication":"stag.na'lis","priority_date":"2026-09-15T16:32:33.985Z","description":{"raw":"Etymology. The name ‘stagnalis’ comes from Latin, specifically from ‘stagnum’, which means standing water, pond, or swamp. The suffix -alis is a Latin adjectival ending meaning related to.\nBrief description. Planktophila stragnalis MRE-20 (ENA accession number GCA_965267665) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-04-06) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,464,932 bp, a GC content of 47.6%, and a coding density of 96%. It encodes one rRNA operon and 42 tRNA genes. Recruitment analysis indicated its presence in the epilimnion (0.5m depth) of Římov Reservoir, and to a lower extent in the hypolimnion (30m depth). It encodes for a complete pentose phosphate pathway, both an actinorhodopsin and a heliorhodopsin, and for the retinal biosynthesis pathway. The closest isolated relative is Planktophila lacus MMS-IIB-60, with whom it shares an average nucleotide identity of 83.15%. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota; c__Actinomycetia; o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__.","html":"\u003cdiv\u003eEtymology. The name ‘stagnalis’ comes from Latin, specifically from ‘stagnum’, which means standing water, pond, or swamp. The suffix -alis is a Latin adjectival ending meaning \u003cem\u003erelated to\u003c/em\u003e.\u003c/div\u003e\u003cdiv\u003eBrief description. \u003cem\u003ePlanktophila stragnalis\u003c/em\u003e MRE-20 (ENA accession number GCA_965267665) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-04-06) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,464,932 bp, a GC content of 47.6%, and a coding density of 96%. It encodes one rRNA operon and 42 tRNA genes. Recruitment analysis indicated its presence in the epilimnion (0.5m depth) of Římov Reservoir, and to a lower extent in the hypolimnion (30m depth). It encodes for a complete pentose phosphate pathway, both an actinorhodopsin and a heliorhodopsin, and for the retinal biosynthesis pathway. The closest isolated relative is \u003cem\u003ePlanktophila lacus\u003c/em\u003e MMS-IIB-60, with whom it shares an average nucleotide identity of 83.15%. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota; c__Actinomycetia; o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__.\u003c/div\u003e"},"formal_styling":{"raw":"Planktophila stagnalis Chiriac et al., 2025 (priority 2026)","html":"\u003cspan data-type=name data-value=\"Planktophila stagnalis\" data-id=\"51479\" data-validated=1 data-correct=1 data-candidatus=0\u003e\u003ci\u003ePlanktophila stagnalis\u003c/i\u003e\u003c/span\u003e Chiriac et al., 2025 (priority 2026)"},"etymology":"N.L. fem. adj. stagnalis, of standing water, pond, or swamp","nomenclatural_type":{"class":"Genome","id":4095,"url":"https://api.seqco.de/v1/genomes/4095.json","uri":"https://seqco.de/g:4095","display":"NCBI Assembly: GCA_965267665.1"},"proposed_in":{"id":4807,"citation":"Chiriac et al., 2025, Microbiome","doi":"10.1186/s40168-025-02272-x","url":"https://api.seqco.de/v1/publications/4807.json"},"classification":[{"id":753,"name":"Bacteria","rank":"domain","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":3437,"url":"https://api.seqco.de/v1/names/3437.json","uri":"https://seqco.de/i:3437","display":"Bacillus"},"created_at":"2021-09-30T17:32:32.936Z","updated_at":"2024-12-13T10:36:54.606Z","url":"https://api.seqco.de/v1/names/753.json","uri":"https://seqco.de/i:753"},{"id":812,"name":"Actinomycetota","rank":"phylum","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2021-10-22T14:21:06.866Z","updated_at":"2024-06-06T17:52:11.291Z","url":"https://api.seqco.de/v1/names/812.json","uri":"https://seqco.de/i:812"},{"id":34427,"name":"Actinomycetes","rank":"class","status_name":"Valid (ICNP)","priority_date":null,"nomenclatural_type":{"class":"Name","id":1373,"url":"https://api.seqco.de/v1/names/1373.json","uri":"https://seqco.de/i:1373","display":"Actinomyces"},"created_at":"2024-01-24T10:46:48.721Z","updated_at":"2024-06-11T11:10:55.971Z","url":"https://api.seqco.de/v1/names/34427.json","uri":"https://seqco.de/i:34427"},{"id":23833,"name":"Nanopelagicales","rank":"order","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-04T16:55:53.055Z","updated_at":"2025-06-05T17:26:21.072Z","url":"https://api.seqco.de/v1/names/23833.json","uri":"https://seqco.de/i:23833"},{"id":23843,"name":"Nanopelagicaceae","rank":"family","status_name":"Valid (SeqCode)","priority_date":"2018-01-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":23834,"url":"https://api.seqco.de/v1/names/23834.json","uri":"https://seqco.de/i:23834","display":"Nanopelagicus"},"created_at":"2022-12-11T18:25:38.461Z","updated_at":"2025-06-05T17:26:21.050Z","url":"https://api.seqco.de/v1/names/23843.json","uri":"https://seqco.de/i:23843"},{"id":23847,"name":"Planktophila","rank":"genus","status_name":"Valid (SeqCode)","priority_date":"2009-11-01T00:00:00.000Z","nomenclatural_type":{"class":"Name","id":164,"url":"https://api.seqco.de/v1/names/164.json","uri":"https://seqco.de/i:164","display":"Planktophila limnetica"},"created_at":"2022-12-11T18:59:17.116Z","updated_at":"2025-06-05T17:26:21.016Z","url":"https://api.seqco.de/v1/names/23847.json","uri":"https://seqco.de/i:23847"}],"children":[],"register":{"acc_url":"seqco.de/r:pdwftyg3","title":"Register list for 26 new names including Aquilimus gen. nov.","priority_date":"2026-09-15T16:32:33.985Z","url":"https://api.seqco.de/v1/registers/r:pdwftyg3.json","uri":"https://seqco.de/r:pdwftyg3"},"created_at":"2025-08-04T08:59:32.954Z","updated_at":"2026-10-27T11:47:09.556Z"}