{"response":{"status":"ok","message_type":"publication"},"id":2554,"citation":"Tan, Goodfellow, 2015, Bergey's Manual of Systematics of Archaea and Bacteria","doi":"10.1002/9781118960608.gbm00176","url":"https://api.seqco.de/v1/publications/2554.json","link_ext":"https://doi.org/10.1002/9781118960608.gbm00176","title":"\u003ci\u003eAmycolatopsis\u003c/i\u003e","journal":"Bergey's Manual of Systematics of Archaea and Bacteria","journal_loc":"","journal_date":"2015-09-14","pub_type":"other","abstract":"\u003cjats:title\u003eAbstract\u003c/jats:title\u003e\n                  \u003cjats:sec\u003e\n                    \u003cjats:label/\u003e\n                    \u003cjats:p\u003e\n                      A.my.co.la.top'sis. N.L. fem. n.\n                      \u003cjats:italic\u003eAmycolata\u003c/jats:italic\u003e\n                      genus belonging to the order\n                      \u003cjats:italic\u003eActinomycetales\u003c/jats:italic\u003e\n                      ; Gr. fem. n.\n                      \u003cjats:italic\u003eopsis\u003c/jats:italic\u003e\n                      aspect, appearance; N.L. fem. n.\n                      \u003cjats:italic\u003eAmycolatopsis\u003c/jats:italic\u003e\n                      that which appears similar to\n                      \u003cjats:italic\u003eAmycolata\u003c/jats:italic\u003e\n                      .\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      \u003cjats:bold\u003eAerobic to facultatively anaerobic\u003c/jats:bold\u003e\n                      ,\n                      \u003cjats:bold\u003eGram‐stain‐positive\u003c/jats:bold\u003e\n                      ,\n                      \u003cjats:bold\u003enon‐acid‐fast\u003c/jats:bold\u003e\n                      ,\n                      \u003cjats:bold\u003enonmotile\u003c/jats:bold\u003e\n                      ,\n                      \u003cjats:bold\u003ecatalase‐positive actinomycetes that form branching substrate hyphae which fragment into squarish and rod‐shaped elements\u003c/jats:bold\u003e\n                      .\n                      \u003cjats:bold\u003eWhen formed\u003c/jats:bold\u003e\n                      ,\n                      \u003cjats:bold\u003eaerial hyphae may be sterile or differentiate into chains of smooth‐walled\u003c/jats:bold\u003e\n                      ,\n                      \u003cjats:bold\u003esquarish to ellipsoidal spore‐like structures\u003c/jats:bold\u003e\n                      . Chemo‐organotrophic to facultatively autotrophic. Grows on a broad range of organic and synthetic media. Mesophilic or thermophilic.\n                      \u003cjats:bold\u003e\n                        Whole‐organism hydrolysates are rich in\n                        \u003cjats:italic\u003emeso\u003c/jats:italic\u003e\n                        ‐2\n                      \u003c/jats:bold\u003e\n                      ,\n                      \u003cjats:bold\u003e6‐diaminopimelic acid\u003c/jats:bold\u003e\n                      ,\n                      \u003cjats:bold\u003earabinose\u003c/jats:bold\u003e\n                      ,\n                      \u003cjats:bold\u003eand galactose\u003c/jats:bold\u003e\n                      . The peptidoglycan is of the A1γ type. Muramic acid moieties are\n                      \u003cjats:italic\u003eN\u003c/jats:italic\u003e\n                      ‐acetylated.\n                      \u003cjats:bold\u003eThe diagnostic phospholipid is phosphatidylethanolamine\u003c/jats:bold\u003e\n                      (\n                      \u003cjats:bold\u003ewith or without phosphatidylmethylethanolamine\u003c/jats:bold\u003e\n                      )\n                      \u003cjats:bold\u003eor phosphatidylmethylethanolamine\u003c/jats:bold\u003e\n                      with variable occurrence of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, and phosphatidylinositol mannosides; contains\n                      \u003cjats:bold\u003ecomplex mixtures of saturated and branched chain fatty acids\u003c/jats:bold\u003e\n                      . Does not contain mycolic acids. The phylogenetic position of\n                      \u003cjats:italic\u003eAmycolatopsis\u003c/jats:italic\u003e\n                      , as determined by 16S rRNA gene sequence analysis, is in the family\n                      \u003cjats:italic\u003ePseudonocardiaceae\u003c/jats:italic\u003e\n                      .\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003eCommon in arid soils but has also been isolated from activated sludge, equine placentas, and from clinical and plant material.\u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      \u003cjats:italic\u003eDNA G\u003c/jats:italic\u003e\n                      +\n                      \u003cjats:italic\u003eC content\u003c/jats:italic\u003e\n                      (\n                      \u003cjats:italic\u003emol\u003c/jats:italic\u003e\n                      %): 66–75 (\n                      \u003cjats:italic\u003eT\u003c/jats:italic\u003e\n                      \u003cjats:sub\u003em\u003c/jats:sub\u003e\n                      ; HPLC).\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      \u003cjats:italic\u003eType species\u003c/jats:italic\u003e\n                      :\n                      \u003cjats:bold\u003eAmycolatopsis orientalis\u003c/jats:bold\u003e\n                      (Pittenger and Brigham 1956) Lechevalier, Prauser, Labeda and Ruan 1986, 35\n                      \u003cjats:sup\u003eVP\u003c/jats:sup\u003e\n                      .\n                    \u003c/jats:p\u003e\n                  \u003c/jats:sec\u003e\n                  \u003cjats:sec\u003e\n                    \u003cjats:title\u003eTaxonomic and Nomenclature Notes\u003c/jats:title\u003e\n                    \u003cjats:p\u003e\n                      According to the List of Prokaryotic names with Standing in Nomenclature (LPSN), the taxonomic status of the genus\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/genus/amycolatopsis\"\u003e\n                        \u003cjats:italic\u003eAmycolatopsis\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      is: correct name (last update, February 2025)\n                      \u003cjats:sup\u003e*\u003c/jats:sup\u003e\n                      .\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      \u003cjats:bold\u003eLPSN classification:\u003c/jats:bold\u003e\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/domain/bacteria\"\u003e\n                        \u003cjats:italic\u003eBacteria\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/kingdom/bacillati\"\u003e\n                        \u003cjats:italic\u003eBacillati\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/phylum/actinomycetota\"\u003e\n                        \u003cjats:italic\u003eActinomycetota\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/class/actinomycetes\"\u003e\n                        \u003cjats:italic\u003eActinomycetes\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/order/pseudonocardiales\"\u003e\n                        \u003cjats:italic\u003ePseudonocardiales\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/family/pseudonocardiaceae\"\u003e\n                        \u003cjats:italic\u003ePseudonocardiaceae\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/genus/amycolatopsis\"\u003e\n                        \u003cjats:italic\u003eAmycolatopsis\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      The genus\n                      \u003cjats:italic\u003eAmycolatopsis\u003c/jats:italic\u003e\n                      can also be recovered in the Genome Taxonomy Database (GTDB) as\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=g__Amycolatopsis\"\u003e\n                        \u003cjats:italic\u003eg__Amycolatopsis\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      (version v220)\n                      \u003cjats:sup\u003e**\u003c/jats:sup\u003e\n                      .\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      \u003cjats:bold\u003eGTDB classification:\u003c/jats:bold\u003e\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=d__Bacteria\"\u003e\n                        \u003cjats:italic\u003ed__Bacteria\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=p__Actinomycetota\"\u003e\n                        \u003cjats:italic\u003ep__Actinomycetota\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=c__Actinomycetes\"\u003e\n                        \u003cjats:italic\u003ec__Actinomycetes\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=o__Mycobacteriales\"\u003e\n                        \u003cjats:italic\u003eo__Mycobacteriales\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=f__Pseudonocardiaceae\"\u003e\n                        \u003cjats:italic\u003ef__Pseudonocardiaceae\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=g__Amycolatopsis\"\u003e\n                        \u003cjats:italic\u003eg__Amycolatopsis\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      \u003cjats:sup\u003e*\u003c/jats:sup\u003e\n                      \u003cjats:mixed-citation publication-type=\"journal\"\u003e\n                        \u003cjats:string-name\u003e\n                          \u003cjats:surname\u003eMeier‐Kolthoff\u003c/jats:surname\u003e\n                        \u003c/jats:string-name\u003e\n                        et al. (\n                        \u003cjats:year\u003e2022\u003c/jats:year\u003e\n                        ).\n                        \u003cjats:source\u003eNucleic Acids Res\u003c/jats:source\u003e\n                        ,\n                        \u003cjats:volume\u003e50\u003c/jats:volume\u003e\n                        ,\n                        \u003cjats:fpage\u003eD801\u003c/jats:fpage\u003e\n                        –\n                        \u003cjats:lpage\u003eD807\u003c/jats:lpage\u003e\n                        ; DOI:\n                        \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" ext-link-type=\"doi\" xlink:href=\"10.1093/nar/gkab902\"\u003e10.1093/nar/gkab902\u003c/jats:ext-link\u003e\n                      \u003c/jats:mixed-citation\u003e\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      \u003cjats:sup\u003e**\u003c/jats:sup\u003e\n                      \u003cjats:mixed-citation publication-type=\"journal\"\u003e\n                        \u003cjats:string-name\u003e\n                          \u003cjats:surname\u003eParks\u003c/jats:surname\u003e\n                        \u003c/jats:string-name\u003e\n                        et al. (\n                        \u003cjats:year\u003e2022\u003c/jats:year\u003e\n                        ).\n                        \u003cjats:source\u003eNucleic Acids Res\u003c/jats:source\u003e\n                        ,\n                        \u003cjats:volume\u003e50\u003c/jats:volume\u003e\n                        ,\n                        \u003cjats:fpage\u003eD785\u003c/jats:fpage\u003e\n                        –\n                        \u003cjats:lpage\u003eD794\u003c/jats:lpage\u003e\n                        ; DOI:\n                        \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" ext-link-type=\"doi\" xlink:href=\"10.1093/nar/gkab776\"\u003e10.1093/nar/gkab776\u003c/jats:ext-link\u003e\n                      \u003c/jats:mixed-citation\u003e\n                    \u003c/jats:p\u003e\n                  \u003c/jats:sec\u003e","long_citation_html":"Tan, Goodfellow (2015). \u003ci\u003eAmycolatopsis\u003c/i\u003e. \n\u003ci\u003eBergey\u0026#39;s Manual of Systematics of Archaea and Bacteria\u003c/i\u003e. \u003ca href=\"https://doi.org/10.1002/9781118960608.gbm00176\" target=\"_blank\"\u003eDOI:10.1002/9781118960608.gbm00176\u003c/a\u003e\n","created_at":"2022-04-05T02:00:57.645Z","updated_at":"2025-11-06T13:53:49.757Z","authors":[{"id":10133,"given":"Geok Yuan Annie","family":"Tan","created_at":"2022-04-04T03:53:43.939Z","updated_at":"2022-04-04T03:53:43.939Z","url":"https://api.seqco.de/v1/authors/10133.json"},{"id":10123,"given":"Michael","family":"Goodfellow","created_at":"2022-04-04T03:50:13.964Z","updated_at":"2022-04-04T03:50:13.964Z","url":"https://api.seqco.de/v1/authors/10123.json"}],"names":[{"id":2528,"name":"Amycolatopsis","url":"https://api.seqco.de/v1/names/2528.json","uri":"https://seqco.de/i:2528"}],"subjects":[]}