{"response":{"status":"ok","message_type":"publication"},"id":3470,"citation":"Hahn, Pitt, 2021, Bergey's Manual of Systematics of Archaea and Bacteria","doi":"10.1002/9781118960608.gbm01937","url":"https://api.seqco.de/v1/publications/3470.json","link_ext":"https://doi.org/10.1002/9781118960608.gbm01937","title":"\u003ci\u003eSilvanigrella\u003c/i\u003e","journal":"Bergey's Manual of Systematics of Archaea and Bacteria","journal_loc":"","journal_date":"2021-06-30","pub_type":"other","abstract":"\u003cjats:title\u003eAbstract\u003c/jats:title\u003e\n                  \u003cjats:sec\u003e\n                    \u003cjats:label/\u003e\n                    \u003cjats:p\u003e\n                      Sil.va.ni.grel'la. N.L. fem. dim. n.\n                      \u003cjats:italic\u003eSilvanigrella\u003c/jats:italic\u003e\n                      named after\n                      \u003cjats:italic\u003eSilva nigra\u003c/jats:italic\u003e\n                      the Latin geographic name of the Schwarzwald (Black Forest) mountains located in the south‐west of Germany.\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      The genus\n                      \u003cjats:italic\u003eSilvanigrella\u003c/jats:italic\u003e\n                      accommodates heterotrophic freshwater bacteria isolated from the water column of circumneutral or slightly acidic (pH 5–7) lakes and ponds with low ion concentrations (conductivity \u0026lt; 30 μS/cm). So far, only the two species\n                      \u003cjats:italic\u003eSilvanigrella aquatica\u003c/jats:italic\u003e\n                      and\n                      \u003cjats:italic\u003eSilvanigrella paludirubra\u003c/jats:italic\u003e\n                      have been described. Cells of the type strains have in common red pigmentation, motility, and pleomorphic morphology. In both species, the cell morphology ranges from rod‐shaped cells to filamentous forms, the cell size is variable in length and width. The type strain of\n                      \u003cjats:italic\u003eS. aquatica\u003c/jats:italic\u003e\n                      in addition forms, densely coiled spirals. The type strains of both species grow at temperatures above 30°C, but only the type strain of\n                      \u003cjats:italic\u003eS. paludirubra\u003c/jats:italic\u003e\n                      grows at temperatures below 10°C. Growth occurred up to supplementary NaCl concentrations of 1.0–1.1% (w/v). Both type strains utilized various organic substrates including carbohydrates, amino acids, and short‐chain fatty acids; however, the substrate spectra of the two strains differed. The most abundant fatty acid was iso‐C\n                      \u003cjats:sub\u003e15:0\u003c/jats:sub\u003e\n                      for both type strains, contributing 33% to the total fatty acid content. The major respiratory quinone of\n                      \u003cjats:italic\u003eS. paludirubra\u003c/jats:italic\u003e\n                      is menaquinone MK‐8, while the quinones of\n                      \u003cjats:italic\u003eS. aquatica\u003c/jats:italic\u003e\n                      remained unidentified. The type strains of\n                      \u003cjats:italic\u003eS. aquatica\u003c/jats:italic\u003e\n                      and\n                      \u003cjats:italic\u003eS. paludirubra\u003c/jats:italic\u003e\n                      were both characterized by medium‐sized genomes (3.5 and 3.9 Mb, respectively) with low G + C content (32.6 and 29.3 mol%, respectively).\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      \u003cjats:italic\u003eDNA G + C content (mol%)\u003c/jats:italic\u003e\n                      : 29–33 (genome sequencing).\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      \u003cjats:italic\u003eType species\u003c/jats:italic\u003e\n                      :\n                      \u003cjats:bold\u003eSilvanigrella aquatica\u003c/jats:bold\u003e\n                      Hahn et al. 2017\n                      \u003cjats:sup\u003eVP\u003c/jats:sup\u003e\n                      .\n                    \u003c/jats:p\u003e\n                  \u003c/jats:sec\u003e\n                  \u003cjats:sec\u003e\n                    \u003cjats:title\u003eTaxonomic and Nomenclature Notes\u003c/jats:title\u003e\n                    \u003cjats:p\u003e\n                      According to the List of Prokaryotic names with Standing in Nomenclature (LPSN), the taxonomic status of the genus\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/genus/silvanigrella\"\u003e\n                        \u003cjats:italic\u003eSilvanigrella\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      is: correct name (last update, February 2025)\n                      \u003cjats:sup\u003e*\u003c/jats:sup\u003e\n                      .\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      \u003cjats:bold\u003eLPSN classification:\u003c/jats:bold\u003e\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/domain/bacteria\"\u003e\n                        \u003cjats:italic\u003eBacteria\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/kingdom/pseudomonadati\"\u003e\n                        \u003cjats:italic\u003ePseudomonadati\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/phylum/pseudomonadota\"\u003e\n                        \u003cjats:italic\u003ePseudomonadota\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/class/oligoflexia\"\u003e\n                        \u003cjats:italic\u003eOligoflexia\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/order/silvanigrellales\"\u003e\n                        \u003cjats:italic\u003eSilvanigrellales\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/family/silvanigrellaceae\"\u003e\n                        \u003cjats:italic\u003eSilvanigrellaceae\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://lpsn.dsmz.de/genus/silvanigrella\"\u003e\n                        \u003cjats:italic\u003eSilvanigrella\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      The genus\n                      \u003cjats:italic\u003eSilvanigrella\u003c/jats:italic\u003e\n                      can also be recovered in the Genome Taxonomy Database (GTDB) as\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=g__Silvanigrella\"\u003e\n                        \u003cjats:italic\u003eg__Silvanigrella\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      (version v220)\n                      \u003cjats:sup\u003e**\u003c/jats:sup\u003e\n                      .\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      \u003cjats:bold\u003eGTDB classification:\u003c/jats:bold\u003e\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=d__Bacteria\"\u003e\n                        \u003cjats:italic\u003ed__Bacteria\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=p__Bdellovibrionota\"\u003e\n                        \u003cjats:italic\u003ep__Bdellovibrionota\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=c__Oligoflexia\"\u003e\n                        \u003cjats:italic\u003ec__Oligoflexia\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=o__Silvanigrellales\"\u003e\n                        \u003cjats:italic\u003eo__Silvanigrellales\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=f__Silvanigrellaceae\"\u003e\n                        \u003cjats:italic\u003ef__Silvanigrellaceae\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                      /\n                      \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://gtdb.ecogenomic.org/tree?r=g__Silvanigrella\"\u003e\n                        \u003cjats:italic\u003eg__Silvanigrella\u003c/jats:italic\u003e\n                      \u003c/jats:ext-link\u003e\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      \u003cjats:sup\u003e*\u003c/jats:sup\u003e\n                      \u003cjats:mixed-citation publication-type=\"journal\"\u003e\n                        \u003cjats:string-name\u003e\n                          \u003cjats:surname\u003eMeier‐Kolthoff\u003c/jats:surname\u003e\n                        \u003c/jats:string-name\u003e\n                        et al. (\n                        \u003cjats:year\u003e2022\u003c/jats:year\u003e\n                        ).\n                        \u003cjats:source\u003eNucleic Acids Res\u003c/jats:source\u003e\n                        ,\n                        \u003cjats:volume\u003e50\u003c/jats:volume\u003e\n                        ,\n                        \u003cjats:fpage\u003eD801\u003c/jats:fpage\u003e\n                        –\n                        \u003cjats:lpage\u003eD807\u003c/jats:lpage\u003e\n                        ; DOI:\n                        \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" ext-link-type=\"doi\" xlink:href=\"10.1093/nar/gkab902\"\u003e10.1093/nar/gkab902\u003c/jats:ext-link\u003e\n                      \u003c/jats:mixed-citation\u003e\n                    \u003c/jats:p\u003e\n                    \u003cjats:p\u003e\n                      \u003cjats:sup\u003e**\u003c/jats:sup\u003e\n                      \u003cjats:mixed-citation publication-type=\"journal\"\u003e\n                        \u003cjats:string-name\u003e\n                          \u003cjats:surname\u003eParks\u003c/jats:surname\u003e\n                        \u003c/jats:string-name\u003e\n                        et al. (\n                        \u003cjats:year\u003e2022\u003c/jats:year\u003e\n                        ).\n                        \u003cjats:source\u003eNucleic Acids Res\u003c/jats:source\u003e\n                        ,\n                        \u003cjats:volume\u003e50\u003c/jats:volume\u003e\n                        ,\n                        \u003cjats:fpage\u003eD785\u003c/jats:fpage\u003e\n                        –\n                        \u003cjats:lpage\u003eD794\u003c/jats:lpage\u003e\n                        ; DOI:\n                        \u003cjats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" ext-link-type=\"doi\" xlink:href=\"10.1093/nar/gkab776\"\u003e10.1093/nar/gkab776\u003c/jats:ext-link\u003e\n                      \u003c/jats:mixed-citation\u003e\n                    \u003c/jats:p\u003e\n                  \u003c/jats:sec\u003e","long_citation_html":"Hahn, Pitt (2021). \u003ci\u003eSilvanigrella\u003c/i\u003e.\n\u003ci\u003eBergey\u0026#39;s Manual of Systematics of Archaea and Bacteria\u003c/i\u003e.\n\u003ca href=\"https://doi.org/10.1002/9781118960608.gbm01937\" target=\"_blank\"\u003eDOI: 10.1002/9781118960608.gbm01937\u003c/a\u003e\n","created_at":"2024-03-13T14:25:33.689Z","updated_at":"2025-11-06T14:38:16.013Z","authors":[{"id":9652,"given":"Martin W.","family":"Hahn","created_at":"2021-12-15T17:20:27.351Z","updated_at":"2021-12-15T17:20:27.351Z","url":"https://api.seqco.de/v1/authors/9652.json"},{"id":12089,"given":"Alexandra","family":"Pitt","created_at":"2023-07-24T16:01:57.154Z","updated_at":"2023-07-24T16:01:57.154Z","url":"https://api.seqco.de/v1/authors/12089.json"}],"names":[{"id":36404,"name":"Spirobacillus","url":"https://api.seqco.de/v1/names/36404.json","uri":"https://seqco.de/i:36404"}],"subjects":[]}